View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17153_low_8 (Length: 315)
Name: NF17153_low_8
Description: NF17153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17153_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 38139782 - 38139555
Alignment:
| Q |
15 |
caaaggcaagttcaaaacagtattacatttaggggnnnnnnnnggttggtcctgtttagggggactattactgcatctttttaccatgcagcacttgtaa |
114 |
Q |
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| T |
38139782 |
caaaggcaagttcaaaacagtattacatttagggggaaaaaaaggttggtcctgtttagggggactattactgcatctttttaccatgcagcacttgtaa |
38139683 |
T |
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| Q |
115 |
aattcaagaaaacgttggtcctgattctgaaatgccgtccctaaaattaaaatgcaccggatttatgtctttactattaccacaccaccaacaagattca |
214 |
Q |
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| T |
38139682 |
aattcaagaaaacgttggtcctgtttctgaaatgccgtccctaaaattaaaatgcaccggatttatgtctttactattaccacaccaccaacaagattca |
38139583 |
T |
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| Q |
215 |
cc-aatgtcatgactcatgagtacatat |
241 |
Q |
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| T |
38139582 |
ccaaatgtcatgactcatgagtacatat |
38139555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 297
Target Start/End: Complemental strand, 38117515 - 38117285
Alignment:
| Q |
76 |
ggactattactgcatctttttaccatgcagcacttgtaaaattcaagaaa-acg-----ttggtcctgattctgaaatgccgtccctaaaattaaaatgc |
169 |
Q |
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| T |
38117515 |
ggactactactgcatctttttaccatgcagcacttacagaattcaagaaacacggtcctgtactcgtgttcatgaaatgccatccctcaagctaaaatgc |
38117416 |
T |
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| Q |
170 |
accggattta--tgtctttactattaccacaccaccaacaagattcacca-atgtcatgactcatgagtacatatattcaagtaaagtttaatgtaatga |
266 |
Q |
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| T |
38117415 |
tacagatttatctgtcattaccatcaccatacctccaacaattttaaccatatgtcatgactcatgattacatattttcaagtaaagtttaatctaatga |
38117316 |
T |
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| Q |
267 |
taaacagtaaaacacaacccaacagaaatga |
297 |
Q |
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| T |
38117315 |
taaacagtcaagcacagcccaataaaaatga |
38117285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 38161147 - 38161111
Alignment:
| Q |
261 |
taatgataaacagtaaaacacaacccaacagaaatga |
297 |
Q |
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| T |
38161147 |
taatgataaaccgtaaaacacagcccaacagaaatga |
38161111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 297
Target Start/End: Complemental strand, 49005263 - 49005087
Alignment:
| Q |
124 |
aaacgttggtcctgattctgaaatgccgtccctaaaattaaaatgcaccggattta--tgtctttactattaccacaccaccaacaagattcacc-aatg |
220 |
Q |
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|||| ||||||||| |||||||||||| ||| | ||| ||| |||| |||||| |||| |||||||||||| ||| ||||||| || ||| |||| |
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| T |
49005263 |
aaacattggtcctgtttctgaaatgccatccttcaaactaagatgctatagatttatctgtcattactattaccatacctccaacaattttaaccaaatg |
49005164 |
T |
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| Q |
221 |
tcatgactcatgagtacatatattcaagtaaagtttaatgtaatgataaacagtaaaacacaacccaacagaaatga |
297 |
Q |
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|||||| | |||| ||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||| |
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| T |
49005163 |
tcatgaatgatgattacatattttcaagtaaagtttaatctaatgataaacagtcaaacacagcccaatagaaatga |
49005087 |
T |
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