View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17153_low_9 (Length: 287)
Name: NF17153_low_9
Description: NF17153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17153_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 40634673 - 40634397
Alignment:
| Q |
11 |
attatacttagcatgattttgaatgaatcaaaacaagattggtagcttaccaatgtttcatctgtggattttgaatccaaaacagccttataacctttgt |
110 |
Q |
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| T |
40634673 |
attatacttagcatgattttgaatgaatcaaaacaagattggtagcttaccaatgtttcatctgtggattttgaatccaaaacagccttataacctttgt |
40634574 |
T |
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| Q |
111 |
atattggaccttcagatgattttatatcaccagaaacttcaatttctccataaaaatattcattgacacaagctgcaatatttcacaccatacaataaat |
210 |
Q |
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| T |
40634573 |
atattggaccttcagatgattttatatcaccagaaacttcaatttctccataaaaatattcattgacacaagctgcaatatttcacaccatacaataaat |
40634474 |
T |
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| Q |
211 |
tgttaatatgcaaagtaataaaacctttgatactatgcatgtgctatgaatttggcataccttctatagatttggca |
287 |
Q |
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| T |
40634473 |
tgttaatatgcaaagtaataaaacctttgatactatgcatgtgttatgaatttggcataccttctatagatttggca |
40634397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 40646273 - 40646040
Alignment:
| Q |
11 |
attatacttagcatgattttgaatgaatcaaaacaagattggtagcttaccaatgtttcatctgtggattttgaatccaaaacagccttataacctttgt |
110 |
Q |
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| T |
40646273 |
attatactcagcatgttttagaatgaatcaaaacaagatgaatagcttaccaatgtttcatcagtggattttgaatccaaaactgctttataacctttgt |
40646174 |
T |
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| Q |
111 |
atattggaccttcagatgattttatatcaccagaaacttcaatttctccataaaaatattcattgacacaagctgcaatatttcacaccatacaataaat |
210 |
Q |
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| T |
40646173 |
atattgaatcatcacatgattttatatcaccagaaacttcaatttctccattaaaatattcaccgacacaagctgcacgaattcacaccgtacaataaaa |
40646074 |
T |
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| Q |
211 |
tgttaatatgcaaagtaataaaacctttgatactatg |
247 |
Q |
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| T |
40646073 |
tgttatcatacaaag---caaaacctttgatactatg |
40646040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 4781083 - 4781217
Alignment:
| Q |
59 |
accaatgtttcatctgtggattttgaatccaaaacagccttataacctttgtatattggaccttcagatgattttatatcaccagaaacttcaatttctc |
158 |
Q |
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|||| ||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| | ||||||||||| | || || | |||||||||| |
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| T |
4781083 |
accagtgtttcatcaatggattttgaatccaaaacattcttgtaacctttgtatatgggatcctcagatgatttgttttctccggggctatcaatttctc |
4781182 |
T |
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| Q |
159 |
cataaaaatattcattgacacaagctgcaatattt |
193 |
Q |
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| T |
4781183 |
cataaaaatattcattgacacaagctgcaagattt |
4781217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 31134465 - 31134395
Alignment:
| Q |
31 |
gaatgaatcaaaacaagattggtagcttaccaatgtttcatctgtggattttgaatccaaaacagccttat |
101 |
Q |
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| T |
31134465 |
gaatgaaacaaaataagattgatagcttacaaaggtttcatctgtggtctttgaatccaaaacagtcttat |
31134395 |
T |
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