View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17154_high_1 (Length: 785)

Name: NF17154_high_1
Description: NF17154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17154_high_1
NF17154_high_1
[»] chr1 (10 HSPs)
chr1 (112-498)||(7241321-7241707)
chr1 (569-770)||(7241785-7241992)
chr1 (20-103)||(14479551-14479634)
chr1 (25-103)||(51445587-51445665)
chr1 (25-102)||(14478264-14478341)
chr1 (20-79)||(28051643-28051702)
chr1 (20-101)||(51446879-51446960)
chr1 (19-99)||(40533639-40533719)
chr1 (20-104)||(28050317-28050401)
chr1 (26-104)||(40634733-40634811)
[»] chr4 (12 HSPs)
chr4 (16-104)||(8363421-8363509)
chr4 (25-104)||(26496350-26496429)
chr4 (25-86)||(56156949-56157010)
chr4 (20-100)||(36243519-36243599)
chr4 (16-104)||(56157528-56157616)
chr4 (34-103)||(20625554-20625623)
chr4 (30-86)||(20620153-20620209)
chr4 (20-104)||(26495118-26495202)
chr4 (25-104)||(52137422-52137501)
chr4 (26-104)||(36244809-36244887)
chr4 (50-103)||(11385717-11385770)
chr4 (38-83)||(52138848-52138893)
[»] chr7 (6 HSPs)
chr7 (25-104)||(41328215-41328294)
chr7 (20-102)||(41329506-41329588)
chr7 (16-104)||(39981313-39981401)
chr7 (25-103)||(35296859-35296937)
chr7 (27-78)||(32653485-32653536)
chr7 (46-101)||(32653729-32653784)
[»] chr5 (4 HSPs)
chr5 (18-103)||(11796566-11796651)
chr5 (30-102)||(23325910-23325982)
chr5 (34-104)||(23334017-23334087)
chr5 (19-104)||(11797568-11797653)
[»] scaffold0114 (1 HSPs)
scaffold0114 (20-102)||(38538-38620)
[»] chr3 (6 HSPs)
chr3 (20-102)||(13621994-13622076)
chr3 (26-103)||(49379698-49379775)
chr3 (25-104)||(13620916-13620995)
chr3 (25-103)||(49380995-49381073)
chr3 (25-102)||(14744061-14744138)
chr3 (47-104)||(38524350-38524407)
[»] chr2 (10 HSPs)
chr2 (25-103)||(4921099-4921177)
chr2 (20-104)||(28610018-28610102)
chr2 (19-104)||(19397526-19397611)
chr2 (16-104)||(28611284-28611372)
chr2 (25-77)||(45699523-45699575)
chr2 (20-102)||(4919825-4919907)
chr2 (17-83)||(8321276-8321342)
chr2 (19-79)||(19398835-19398895)
chr2 (16-61)||(45699568-45699613)
chr2 (49-102)||(5062200-5062253)
[»] scaffold0219 (1 HSPs)
scaffold0219 (16-104)||(6891-6979)
[»] chr8 (4 HSPs)
chr8 (25-104)||(9854920-9854999)
chr8 (19-104)||(42793695-42793780)
chr8 (17-102)||(38697154-38697239)
chr8 (25-104)||(9853563-9853642)
[»] chr6 (2 HSPs)
chr6 (25-102)||(11722784-11722861)
chr6 (30-70)||(21777530-21777570)


Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 112 - 498
Target Start/End: Original strand, 7241321 - 7241707
Alignment:
Q  112 accggtttgaagtaaagcaaatccttcaaattctcatttccttcggaaatcaaatgacacatttatatggggagctaacaaaaattgtgtgttatcggtg 211  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7241321 accggtttgaagcgacgcaaatccttcaaattctcatttccttcggaaatcaaatgacacatttatatggggagctaacaaaaattgtgttttatcggtg 7241420  T
Q  212 aagctggcatataaatttttgaaggataagaatgaaattttagtgcggactaaaatctggaaactaaaaaccatctctcttcatactcacttcatttgga 311  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7241421 aagctggcatataaatttttgaaggataagaatgaagttttagtgtggactaaaatctggaaactaaaaaccatctctcttcatactcacttcatttgga 7241520  T
Q  312 gaatgttacatggaaggattaatgtgagatcatctcttttacaaagtgtagttcatatacaaaatctacacttctcaattcaataagatgtcttttacaa 411  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7241521 gaatgttacatggaaggattaatgtgaggtcatctcttttacaaagtgtagttcatatacaaaatctacacttctcaattcaataagatatcttttacaa 7241620  T
Q  412 atgacaaaaccgtgagagattccacaagatccggcccaaaatagataatattttagaaacgatatgcttagacttgaggttagatat 498  Q
    ||||||||||||||| ||||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||    
T  7241621 atgacaaaaccgtgaaagatttcacaagacccgacccaaaatagataatactttagaaacgatatgcttagacttgtgattagatat 7241707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 569 - 770
Target Start/End: Original strand, 7241785 - 7241992
Alignment:
Q  569 tcatcgctaaagtatagtattaaaaagtcagaa------catttttcctaagtggaaaattgcaattcaggttgcatcaagtcggcaaccttcatgattt 662  Q
    |||||||||||||||||||||||||||||||||      |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7241785 tcatcgctaaagtatagtattaaaaagtcagaattaaaacatttttcctaagttgaaaattgcaattcaggttgcatcaagtcggcaaccttcatgattt 7241884  T
Q  663 attagacttctaaaataaaaaggttgactaaccatagtctggttggtagatttatgtcacaaaggtcatgtcattttcataatttcatttgtgagagtgg 762  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7241885 attagacttctaaaataaaaaggttgactaaccatagtctggttggtaaatttatgtcacaaaggtcatgtcattttcataatttcatttgtgagagtgg 7241984  T
Q  763 tccattct 770  Q
    ||||||||    
T  7241985 tccattct 7241992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 14479551 - 14479634
Alignment:
Q  20 gggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcct 103  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||| |||||||||||    
T  14479551 gggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagcct 14479634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 51445665 - 51445587
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcct 103  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||||||||    
T  51445665 caaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaattaagcct 51445587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 14478341 - 14478264
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcc 102  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||  ||| ||||||||||    
T  14478341 caaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttagaggaccaaatgtccaattaagcc 14478264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 28051643 - 28051702
Alignment:
Q  20 gggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttag 79  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28051643 gggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttag 28051702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 51446879 - 51446960
Alignment:
Q  20 gggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagc 101  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||  ||||||||||||||||||||  ||| |||||||||    
T  51446879 gggaccaaaatgtgggttttacaatttatgtgaccaaaatgtaaatgcataattatttagaggaccaaatgtccaattaagc 51446960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 40533639 - 40533719
Alignment:
Q  19 agggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaa 99  Q
    ||||| ||||||||  |||||||||||||||| ||||||||||||||| |||||||||||| ||||||||  |||||||||    
T  40533639 agggaccaaaatgttggttttacaatttatggaaccaaaatgtaaactgataattatttaggggaccattgatgcaattaa 40533719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 28050401 - 28050317
Alignment:
Q  20 gggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||| |||||||||  |||||||||||||||||||||||||||||| ||||||||||||  ||||||  |||  |||||||||||    
T  28050401 gggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttaagggaccaaatgtctaattaagccta 28050317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 40634733 - 40634811
Alignment:
Q  26 aaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||||||||||||||  |||||| ||| |||||||||||||   |||||||||| ||||||||| || |||||| ||||    
T  40634733 aaaatgtgagttttatgatttatcggatcaaaatgtaaactgcaaattatttaggggaccatttatgaaattaaaccta 40634811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 8363421 - 8363509
Alignment:
Q  16 caaagggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||| ||||||||||||    
T  8363421 caaagggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagccta 8363509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 26496350 - 26496429
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||  ||| ||||||||||||    
T  26496350 caaaatgtgagttttacaatttatgggaccaaaatgtaaacacataattagttagaggaccaaatgtccaattaagccta 26496429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 56157010 - 56156949
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggacca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  56157010 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggacca 56156949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 36243599 - 36243519
Alignment:
Q  20 gggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaag 100  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||| ||||||||    
T  36243599 gggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 36243519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 56157528 - 56157616
Alignment:
Q  16 caaagggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||||||| |||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||  | | ||||||||||||    
T  56157528 caaagggaccaaaatgtgagttttacaatttatgaaaccaaaatgtaaacgcataattatttagaggaccaaatatccaattaagccta 56157616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 20625554 - 20625623
Alignment:
Q  34 agttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcct 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||    
T  20625554 agttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 20625623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 20620209 - 20620153
Alignment:
Q  30 tgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggacca 86  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20620209 tgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggacca 20620153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 26495202 - 26495118
Alignment:
Q  20 gggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||  | | ||||||||||||    
T  26495202 gggaccaaaatgtgagttttacaatttataggagcaaaatgtaaactcataattatttaggggaccaaatattcaattaagccta 26495118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 52137501 - 52137422
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    ||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||  | | ||||||||||||    
T  52137501 caaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatatccaattaagccta 52137422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 36244809 - 36244887
Alignment:
Q  26 aaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||  | | ||||||||||||    
T  36244809 aaaatgtgagttttacaatttatgggatcaaaatgtaaactcataattattttggggaccaaatatccaattaagccta 36244887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 11385717 - 11385770
Alignment:
Q  50 ggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcct 103  Q
    |||||||| || || |||||||||||||| |||||||||| || ||||||||||    
T  11385717 ggaccaaattgaaatctcataattatttaaaggaccatttatgtaattaagcct 11385770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 52138848 - 52138893
Alignment:
Q  38 ttacaatttatgggaccaaaatgtaaactcataattatttagagga 83  Q
    |||||||||||| || |||||| ||||| |||||||||||||||||    
T  52138848 ttacaatttatgtgatcaaaatataaacgcataattatttagagga 52138893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 41328294 - 41328215
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||||||||    
T  41328294 caaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaattaagccta 41328215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 41329506 - 41329588
Alignment:
Q  20 gggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcc 102  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||| ||||||||||    
T  41329506 gggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagcc 41329588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 39981401 - 39981313
Alignment:
Q  16 caaagggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||| ||| |||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| ||  ||| ||||||||||||    
T  39981401 caaaaggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaacgcacaattatttagaggatcaaatgtccaattaagccta 39981313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 35296859 - 35296937
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcct 103  Q
    |||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||| |||| | |||||||||||    
T  35296859 caaaatgtgagttttacaatttataggaccaaaatgtaaactacaaattatttagaggactatttatacaattaagcct 35296937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 32653536 - 32653485
Alignment:
Q  27 aaatgtgagttttacaatttatgggaccaaaatgtaaactcataattattta 78  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  32653536 aaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattattta 32653485  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 32653729 - 32653784
Alignment:
Q  46 tatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagc 101  Q
    |||||||||||||||||||  ||||||||||||| ||||||  ||| |||||||||    
T  32653729 tatgggaccaaaatgtaaatacataattatttaggggaccaaatgtccaattaagc 32653784  T

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Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 11796651 - 11796566
Alignment:
Q  18 aagggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcct 103  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||| |||||||||||    
T  11796651 aagggaccaaaatatgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagcct 11796566  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 23325982 - 23325910
Alignment:
Q  30 tgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcc 102  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  23325982 tgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcc 23325910  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 23334017 - 23334087
Alignment:
Q  34 agttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  23334017 agttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagccta 23334087  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 11797568 - 11797653
Alignment:
Q  19 agggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    ||||| ||||||||   |||||| | ||||| ||||||||||||||||||||||||||||| ||||||  ||| ||||||||||||    
T  11797568 agggaccaaaatgttgattttacgagttatgagaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagccta 11797653  T

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Target: scaffold0114 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 38620 - 38538
Alignment:
Q  20 gggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcc 102  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||| ||||||||||    
T  38620 gggaccaaaatgtgagttttacaatttatgggaccaaaatggaaactcataattatttaggggaccaaatgtccaattaagcc 38538  T

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Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 13621994 - 13622076
Alignment:
Q  20 gggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcc 102  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||| ||||||||||    
T  13621994 gggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagcc 13622076  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 49379775 - 49379698
Alignment:
Q  26 aaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcct 103  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  ||| |||||||||||    
T  49379775 aaaatgtgagttttacaatttatgggaccaaaatataaacgcataattatttagaggaccaaatgtccaattaagcct 49379698  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 13620995 - 13620916
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||  |||  |||||||||||    
T  13620995 caaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttagaggaccaaatgtcaaattaagccta 13620916  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 49380995 - 49381073
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcct 103  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||  | | |||||||||||    
T  49380995 caaaatatgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatatccaattaagcct 49381073  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 14744138 - 14744061
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcc 102  Q
    ||||||||||||||||||||||||| |||||||||||||||    ||||||||||||||| |||| | |||| |||||    
T  14744138 caaaatgtgagttttacaatttatgagaccaaaatgtaaaccgcgaattatttagaggactatttatacaatcaagcc 14744061  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 38524407 - 38524350
Alignment:
Q  47 atgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||||||||||||| || |||||||||| |||  ||||||||| || |||||||||||    
T  38524407 atgggaccaaaatgaaatctcataattagttaagggaccatttatgtaattaagccta 38524350  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 4921099 - 4921177
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcct 103  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  ||| |||||||||||    
T  4921099 caaaatgtgagttttacaatttatgggactaaaatgtaaacgcataattatttagaggaccaaatgtccaattaagcct 4921177  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 28610102 - 28610018
Alignment:
Q  20 gggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||  ||| ||||||||||||    
T  28610102 gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggtgaccaaatgtccaattaagccta 28610018  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 19397611 - 19397526
Alignment:
Q  19 agggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    ||||| |||||||| ||||||| |||||||||||||||||||||||||  ||||||||||| ||||||||  ||||||||||||||    
T  19397611 agggaccaaaatgttagttttaaaatttatgggaccaaaatgtaaactggtaattatttaggggaccattgatgcaattaagccta 19397526  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 28611284 - 28611372
Alignment:
Q  16 caaagggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||| ||| |||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||  | | ||||||||||||    
T  28611284 caaaaggaccaaaatatgaattttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatatccaattaagccta 28611372  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 45699575 - 45699523
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattattt 77  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  45699575 caaaatgtgaattttacaatttatgggaccaaaatgtaaacacataattattt 45699523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 4919907 - 4919825
Alignment:
Q  20 gggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcc 102  Q
    |||| |||||||||  ||||| |||||||||||||||| ||||||  ||||||||||||||||||||  ||| ||||||||||    
T  4919907 gggaccaaaatgtggattttataatttatgggaccaaattgtaaatgcataattatttagaggaccaaatgtccaattaagcc 4919825  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 8321276 - 8321342
Alignment:
Q  17 aaagggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagagga 83  Q
    |||||||  |||||||  |||||| |||||||||||||||||||||||| |||||||||||||||||    
T  8321276 aaagggactaaaatgttggttttaaaatttatgggaccaaaatgtaaacgcataattatttagagga 8321342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 19398835 - 19398895
Alignment:
Q  19 agggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttag 79  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||||   |||||||||||    
T  19398835 agggaccaaaatgtaggttttacaatttatgggaccaaaatgtaaaccggtaattatttag 19398895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 45699613 - 45699568
Alignment:
Q  16 caaagggatcaaaatgtgagttttacaatttatgggaccaaaatgt 61  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||    
T  45699613 caaagggactaaaatgtgagttttacaatttatggaaccaaaatgt 45699568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 5062200 - 5062253
Alignment:
Q  49 gggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcc 102  Q
    |||||||||||| || ||||||||||||||  ||||||||| || |||||||||    
T  5062200 gggaccaaaatgaaatctcataattatttaagggaccatttatgtaattaagcc 5062253  T

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Target: scaffold0219 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 6979 - 6891
Alignment:
Q  16 caaagggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||||| | ||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||||||||    
T  6979 caaaggaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaattaagccta 6891  T

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Target: chr8 (Bit Score: 56; Significance: 9e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 9854920 - 9854999
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||||||||    
T  9854920 caaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaattaagccta 9854999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 42793780 - 42793695
Alignment:
Q  19 agggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    ||||| |||||||| | |||||||||||||||||||||||| ||||||  ||||||||||| || |||||  ||||||||||||||    
T  42793780 agggaccaaaatgttaattttacaatttatgggaccaaaatataaactggtaattatttagggggccattaatgcaattaagccta 42793695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 38697239 - 38697154
Alignment:
Q  17 aaagggatcaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcc 102  Q
    ||||||| ||||||||  |||||| |||||||| |||||||||||||| | |||||||||||  |||||| |  ||||||||||||    
T  38697239 aaagggaccaaaatgttggttttataatttatgagaccaaaatgtaaattgataattatttaagggaccactaatgcaattaagcc 38697154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 9853642 - 9853563
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagccta 104  Q
    |||||| | |||||||||||||||||||||||||| |||||  ||||||||||| |||| |   ||| ||||||||||||    
T  9853642 caaaatattagttttacaatttatgggaccaaaatataaacatataattatttaaaggagctaatgttcaattaagccta 9853563  T

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Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 11722861 - 11722784
Alignment:
Q  25 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagaggaccatttgtgcaattaagcc 102  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||  ||| ||||||||||    
T  11722861 caaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttagaggatcaaatgtccaattaagcc 11722784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 21777530 - 21777570
Alignment:
Q  30 tgtgagttttacaatttatgggaccaaaatgtaaactcata 70  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  21777530 tgtgagttttacaacttatgggaccaaaatgtaaactcata 21777570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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