View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17154_high_15 (Length: 257)
Name: NF17154_high_15
Description: NF17154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17154_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 7300427 - 7300598
Alignment:
| Q |
1 |
cattaagacagataattatagtcaaatatgagcaattaccagctagattcagtagaaaaaattgtctgataactgtgacttgtaactattgactaaatga |
100 |
Q |
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| T |
7300427 |
cattaagacagataattgtagtcaaatatgagcat---ccagctagattcagtagaaaaaattgtctgataactgtgacttgtaactcttgactaaatga |
7300523 |
T |
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| Q |
101 |
attttaagtagaagaatgtagcttttagttgaaattagtttggcataaaattagtttatttgagttatgagaatc |
175 |
Q |
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| T |
7300524 |
attttaagtagaagaatgtagctgttagttgaaattagtttggcataaaattagtttatttgagttatgagaatc |
7300598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 7300669 - 7300735
Alignment:
| Q |
176 |
tacccacatatcaatgtgccccagcagtattagcatctcagaaaaagctacaagttagtgatataag |
242 |
Q |
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| T |
7300669 |
tacccacatatcaatgtgcaccagcattattagcatctcagaaaaagctacaagttagtgatataag |
7300735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 7333228 - 7333138
Alignment:
| Q |
39 |
ccagctagattcagtagaaaaaattgtctgataactgtgacttgtaactattgactaaatgaattttaagtagaagaatgtagcttttagt |
129 |
Q |
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| T |
7333228 |
ccagctagattcagtagaaaaaattgtctgataactgaggcttgcaactcttgactaactgaattttaagtagcagaatatagctattagt |
7333138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 7333115 - 7333074
Alignment:
| Q |
115 |
aatgtagcttttagttgaaattagtttggcataaaattagtt |
156 |
Q |
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| T |
7333115 |
aatgtagctaatagttgaaattagtttggcataaagttagtt |
7333074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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