View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17154_high_4 (Length: 390)
Name: NF17154_high_4
Description: NF17154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17154_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 28678580 - 28678943
Alignment:
| Q |
11 |
cataggaaagcttcaagcatttcatatatacaatgacctgctccttcctcctatatacatattctattcatattcccacccacctttttactataccacc |
110 |
Q |
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| T |
28678580 |
cataggaaagcttcaagcatttcatatatacaatgacctgctccttcctcctatatacatattctattcatattcccacccacctttttactataccacc |
28678679 |
T |
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| Q |
111 |
attgatccatctatataacaataaactgtgtcaaacatttgaaatgctctcacacatacttcttgatccaacttttctgataacaaaatatgatgacaga |
210 |
Q |
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| T |
28678680 |
attgatccatctatataacaataaactgtgtcaaacatttgaaatgctctcacacatacttcttgatccaacttttctgataacaaaatatgatgacaga |
28678779 |
T |
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| Q |
211 |
tcatcagagaattcaccctgctagtgatttggagtcacaaaccaaacctacagttcctttgattcctagaaacacttcaaaatccgatcgacgcagtccc |
310 |
Q |
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| T |
28678780 |
tcatcagagaattcaccctgctagtgatttggagtcacaaaccaaacctacagttcctttgattcctagaaacacttcaaaatccgatcgacgcagtccc |
28678879 |
T |
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| Q |
311 |
tcatatccacctcttccgaaacgccactttccagttagacatactcatccaccaaagaagaaaa |
374 |
Q |
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| T |
28678880 |
tcatatccacctcttccgaaacgccactttccagttagacatactcatccaccaaagaagaaaa |
28678943 |
T |
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