View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17154_high_6 (Length: 368)

Name: NF17154_high_6
Description: NF17154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17154_high_6
NF17154_high_6
[»] chr3 (10 HSPs)
chr3 (113-367)||(11020177-11020432)
chr3 (193-367)||(42340274-42340448)
chr3 (266-366)||(27608901-27609001)
chr3 (196-363)||(53497051-53497218)
chr3 (266-366)||(34497370-34497470)
chr3 (192-366)||(55199526-55199700)
chr3 (274-331)||(647196-647253)
chr3 (267-367)||(24176860-24176960)
chr3 (310-366)||(27747683-27747739)
chr3 (192-263)||(647312-647383)
[»] chr7 (10 HSPs)
chr7 (192-367)||(29200952-29201127)
chr7 (192-367)||(16731948-16732123)
chr7 (192-367)||(17710082-17710257)
chr7 (192-366)||(22289256-22289430)
chr7 (192-367)||(9328599-9328774)
chr7 (255-363)||(16098568-16098676)
chr7 (269-367)||(30493607-30493705)
chr7 (268-367)||(3601743-3601842)
chr7 (223-366)||(3275080-3275223)
chr7 (285-364)||(24139139-24139218)
[»] chr4 (17 HSPs)
chr4 (192-367)||(37245849-37246024)
chr4 (192-367)||(29655663-29655838)
chr4 (192-367)||(32577045-32577220)
chr4 (171-365)||(43840305-43840501)
chr4 (192-367)||(49951328-49951503)
chr4 (192-367)||(2064868-2065043)
chr4 (192-367)||(28426198-28426373)
chr4 (192-367)||(49119397-49119572)
chr4 (192-367)||(51734969-51735143)
chr4 (192-365)||(55735024-55735197)
chr4 (204-367)||(26422599-26422762)
chr4 (192-331)||(56065644-56065783)
chr4 (207-365)||(28537786-28537944)
chr4 (269-366)||(51259527-51259624)
chr4 (270-367)||(24989931-24990027)
chr4 (192-302)||(21321542-21321652)
chr4 (267-367)||(44936079-44936179)
[»] chr6 (7 HSPs)
chr6 (192-367)||(30801988-30802163)
chr6 (195-367)||(15605991-15606163)
chr6 (170-367)||(28107131-28107329)
chr6 (192-367)||(19690876-19691051)
chr6 (170-367)||(14680154-14680352)
chr6 (192-331)||(15053208-15053347)
chr6 (290-366)||(34104463-34104539)
[»] chr8 (11 HSPs)
chr8 (192-367)||(7127238-7127413)
chr8 (192-367)||(185588-185762)
chr8 (192-363)||(23853947-23854118)
chr8 (192-331)||(478089-478228)
chr8 (268-367)||(598234-598333)
chr8 (192-331)||(8451156-8451295)
chr8 (268-367)||(40588727-40588826)
chr8 (308-367)||(3606736-3606795)
chr8 (170-367)||(13415015-13415213)
chr8 (269-367)||(33642761-33642859)
chr8 (186-218)||(9496791-9496823)
[»] chr5 (13 HSPs)
chr5 (192-367)||(25730823-25730998)
chr5 (192-366)||(8388101-8388275)
chr5 (192-364)||(20204970-20205142)
chr5 (170-367)||(27532903-27533101)
chr5 (192-368)||(41940733-41940908)
chr5 (170-367)||(15988746-15988944)
chr5 (192-366)||(26597455-26597629)
chr5 (192-363)||(4268114-4268285)
chr5 (192-366)||(12660331-12660505)
chr5 (201-363)||(27292458-27292620)
chr5 (192-329)||(22767292-22767429)
chr5 (192-367)||(34652251-34652426)
chr5 (268-367)||(32632606-32632705)
[»] chr1 (9 HSPs)
chr1 (192-366)||(25682666-25682840)
chr1 (192-367)||(36733711-36733886)
chr1 (192-367)||(44602767-44602942)
chr1 (192-363)||(44527268-44527439)
chr1 (192-366)||(48949722-48949896)
chr1 (192-366)||(51113330-51113504)
chr1 (268-367)||(2885314-2885413)
chr1 (268-367)||(5609430-5609529)
chr1 (192-297)||(48166252-48166357)
[»] chr2 (9 HSPs)
chr2 (170-367)||(88551-88749)
chr2 (273-368)||(26198778-26198873)
chr2 (192-368)||(34695900-34696076)
chr2 (192-368)||(34718312-34718488)
chr2 (266-367)||(1417978-1418079)
chr2 (268-367)||(9710046-9710145)
chr2 (192-367)||(12130635-12130810)
chr2 (241-364)||(22845600-22845723)
chr2 (269-367)||(13109866-13109964)
[»] scaffold0446 (1 HSPs)
scaffold0446 (192-331)||(201-340)
[»] scaffold0922 (1 HSPs)
scaffold0922 (276-367)||(261-352)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 113 - 367
Target Start/End: Complemental strand, 11020432 - 11020177
Alignment:
Q  113 atgttggtagatgctgactgtgcaaagttgtctatgtggcacacacatgacatttaactcaaatgaaatggtagtggacaa-tatgacagttttggaggg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| ||||||| ||||||||||    
T  11020432 atgttggtagatgctgactgtgcaaagttgtctatgtggcacacacttgacatttaactcaaatgaaatgaaagtggacaaatatgacacttttggaggg 11020333  T
Q  212 ggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctactcgagtgtaaggtcta 311  Q
    |||| || |||||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  11020332 ggagacatcagctttactcgatgctatttactttgctgatgggaacaaatggaactgggttgtcttcgagtctgacttaactactccagtgtaaggtcta 11020233  T
Q  312 tcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||||||||||||||||| | | || ||||||||||||||||||||||||||||    
T  11020232 tcgtctccgggccatggtgattcagaattctgtgctattgtttctagtattattta 11020177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 367
Target Start/End: Complemental strand, 42340448 - 42340274
Alignment:
Q  193 atatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagc 292  Q
    |||||||||| |||||||||||||||| |||  || ||||||  ||| |||||||||||| ||||| ||||  | | |||||||||||||| |||| |||    
T  42340448 atatgacagtgttggagggggaggcaatagccctactcgatgtcattcactttgcagatgtgaacagatgggaccgagttgtcttcgagtcagactcagc 42340349  T
Q  293 tactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    ||||  |||| ||| ||| |||||||||||||||||||| | | || ||| |||||||||||||| |||||||||    
T  42340348 tactttagtgcaagctctgtcgtctccgggccatggtgattcagaattctatgctattgtttctaatattattta 42340274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 27609001 - 27608901
Alignment:
Q  266 ctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattatt 365  Q
    |||||||||||||||||| |||| |||||||| |||| |||  ||||||||||||||||||||||| |   || | | ||||||||||||||||||||||    
T  27609001 ctgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttctagtattatt 27608902  T
Q  366 t 366  Q
    |    
T  27608901 t 27608901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 363
Target Start/End: Original strand, 53497051 - 53497218
Alignment:
Q  196 tgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctac 295  Q
    |||||||||| ||||||||||||  ||| ||| | || ||  || ||||||| ||||  |||| ||||  | |||||||||||||||| |||| | ||||    
T  53497051 tgacagtttttgagggggaggcagtagccttactagaggcccttcactttgctgatgctaacagatgggaccgggttgtcttcgagtccgactcatctac 53497150  T
Q  296 tcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtatta 363  Q
    ||  ||| ||| |||||||||||||||||||||||| |   || ||| ||||||||||||||||||||    
T  53497151 tcttgtgcaagctctatcgtctccgggccatggtgattcggaattctatgctattgtttctagtatta 53497218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 34497470 - 34497370
Alignment:
Q  266 ctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattatt 365  Q
    |||||||||||||||||| |||| |||||||| |||| |||  ||||||||||||||||||||||| |   || | | |||||||||| |||||||||||    
T  34497470 ctgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgttcctagtattatt 34497371  T
Q  366 t 366  Q
    |    
T  34497370 t 34497370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 366
Target Start/End: Original strand, 55199526 - 55199700
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||||||   || ||| ||||||| ||| ||||||  | ||  |||| ||||  | ||||||||||| |||| |||| ||    
T  55199526 aatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgttgttggaaacagatgggaccgggttgtcttcaagtccgactcag 55199625  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    ||||||  ||| |||  ||||||||| |||| |||||||| |   || | | |||||||||||||||||||||||    
T  55199626 ctactctggtgcaagcgctatcgtctacgggtcatggtgattcggaattttatgctattgtttctagtattattt 55199700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 647253 - 647196
Alignment:
Q  274 tcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtga 331  Q
    ||||||||||||||| | |||||| |||| ||| ||||||||||||||||||||||||    
T  647253 tcttcgagtctgactcatctactctagtgcaagctctatcgtctccgggccatggtga 647196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 367
Target Start/End: Original strand, 24176860 - 24176960
Alignment:
Q  267 tgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    |||||||||||||||||||||  | |||||| |||| ||| ||||||||||| ||| |||||||| |   || |||  |||||||| |||||||||||||    
T  24176860 tgggttgtcttcgagtctgacacaactactctagtgcaagctctatcgtctctgggtcatggtgattcggaattctaagctattgtatctagtattattt 24176959  T
Q  367 a 367  Q
    |    
T  24176960 a 24176960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 27747739 - 27747683
Alignment:
Q  310 tatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    |||||||||||||||||||||| | |||| ||| ||||||||||| |||||||||||    
T  27747739 tatcgtctccgggccatggtgattcaaaattctatgctattgtttttagtattattt 27747683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 647383 - 647312
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatgg 263  Q
    |||||||||||| |||||||||||||| |||| ||| ||||||  ||| ||||||| |||| ||||| ||||    
T  647383 aatatgacagttatggagggggaggcagcagccttactcgatgtcattcactttgctgatgtgaacagatgg 647312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 29201127 - 29200952
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||||||||||||||||||| | ||  |||| | ||||  ||| ||||||| |||| ||||| |||||   ||||||||||||||||||||| ||    
T  29201127 aatatgacagttttggagggggaggtagcatgtttacttgatgtcattcactttgctgatgtgaacagatggaaacgggttgtcttcgagtctgactcag 29201028  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||| |||| ||| ||||||||||| |||||||||||| | | || ||| ||||||||||||||||||||||||    
T  29201027 ctactctagtgcaagctctatcgtctctgggccatggtgattcagaattctatgctattgtttctagtattattta 29200952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 192 - 367
Target Start/End: Original strand, 16731948 - 16732123
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||||| |||||||||||||||  ||| ||| |||| || ||| ||| ||| |||| ||||| ||||| | | |||||||||||||| ||||       
T  16731948 aatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcgaacagatggaaccgagttgtcttcgagtccgactcgt 16732047  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||| |||| ||| |||||| ||||||||||||||||| | | || ||| ||||||||||||||||||||||||    
T  16732048 ctactctagtgcaagctctatcatctccgggccatggtgattcagaattctctgctattgtttctagtattattta 16732123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 192 - 367
Target Start/End: Original strand, 17710082 - 17710257
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||||| |||||||||||||||  ||| ||| |||| || ||| ||| ||| |||| ||||| ||||| | | |||||||||||||| ||||       
T  17710082 aatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcgaacagatggaaccgagttgtcttcgagtccgactcgt 17710181  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||| |||| ||| |||||| ||||||||||||||||| | | || ||| ||||||||||||||||||||||||    
T  17710182 ctactctagtgcaagctctatcatctccgggccatggtgattcagaattctctgctattgtttctagtattattta 17710257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 366
Target Start/End: Original strand, 22289256 - 22289430
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||||     || ||| ||||||| ||| ||||||| | || ||||||||||  | ||| |||||||||||| |||| ||    
T  22289256 aatatgacagttttggagggggaggtggttgccttactcgatgccattcactttgccgttgggaacaaatgggaccgggctgtcttcgagtccgactcag 22289355  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    |||||| |||| |||  ||||||||||||||||||||||| | | || | | |||||||||||||||||||||||    
T  22289356 ctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattattt 22289430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 9328774 - 9328599
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||| ||||||||||||||||||  ||| ||| ||| ||||||| ||||||| ||||  |||| ||||  | |||||||||| ||||||||||  |    
T  9328774 aatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttggagtctgactctg 9328675  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
     ||||| |||| ||| |||||||||  |||| |||||| | | | || ||| |||  |||||||||||||||||||    
T  9328674 atactctagtgcaagctctatcgtcagcgggacatggtaattcagaattctatgcgtttgtttctagtattattta 9328599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 363
Target Start/End: Original strand, 16098568 - 16098676
Alignment:
Q  255 aacaaatggatctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgttt 354  Q
    |||||||||  | |||||||||||||||| |||| | |||||| |||  ||| || ||||||||||||||||||||| | | || ||| || ||||||||    
T  16098568 aacaaatgggaccgggttgtcttcgagtccgactcatctactctagtacaagctccatcgtctccgggccatggtgattcagaattctatgatattgttt 16098667  T
Q  355 ctagtatta 363  Q
    |||||||||    
T  16098668 ctagtatta 16098676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 30493705 - 30493607
Alignment:
Q  269 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    ||||||||||||||| |||| |  ||||| |||| ||| |||||||||| ||||||||||||| | | || | | ||||||||||| ||||||||||||    
T  30493705 ggttgtcttcgagtccgactcaattactctagtgcaagctctatcgtcttcgggccatggtgattcagaattttatgctattgtttatagtattattta 30493607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 3601743 - 3601842
Alignment:
Q  268 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    ||||||| |||||||| |||| | |||||| |||| ||| | ||||||||| || ||||||||| | | || | | ||||||||||||||||||||||||    
T  3601743 gggttgttttcgagtccgactcatctactctagtgcaagctttatcgtctctggaccatggtgattcagaattttatgctattgtttctagtattattta 3601842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 366
Target Start/End: Original strand, 3275080 - 3275223
Alignment:
Q  223 ctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccggg 322  Q
    ||||| || |||||||| ||||||| | || ||||| || |  |||||||||||||||||| |||| |||||||| |||| |||  ||||| ||||  ||    
T  3275080 ctttactcaatgctattcactttgctgttgggaacatataggactgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcatctctagg 3275179  T
Q  323 ccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    ||| | ||| | | || | | ||||||||||| |||||||||||    
T  3275180 ccacgatgattcataattttatgctattgtttttagtattattt 3275223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 24139139 - 24139218
Alignment:
Q  285 gacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattat 364  Q
    |||| |||||||| |||| ||| ||| ||||||||||| |||| ||| || ||| | | |||||||||||||||||||||    
T  24139139 gactcagctactctagtgcaagctctgtcgtctccgggtcatgttgatttgaaattttatgctattgtttctagtattat 24139218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 37246024 - 37245849
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||||||| |||||||  ||| ||||| ||||  | |||||||||||||||||||||  |    
T  37246024 aatatgacagttttggagggggaggcagtagccttactcgatgctattcactttgcttatgtgaacagatgggaccgggttgtcttcgagtctgactctg 37245925  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||  |||| ||| ||| ||||||| |||||||||||| | | || ||| ||||||||||||||||||||||||    
T  37245924 ctactttagtgcaagctctttcgtctctgggccatggtgattcagaattctatgctattgtttctagtattattta 37245849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 29655838 - 29655663
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||| ||||||||||| ||||||  ||| ||| ||||||  ||| ||||||| |||| ||||| ||||| | | |||||||||||||||||||  |    
T  29655838 aatatgactgttttggagggagaggcagtagccttactcgatgtcattcactttgctgatgtgaacagatggaaccgtgttgtcttcgagtctgactacg 29655739  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||| |||| ||| |||||| ||| ||||||||||||| | | || ||| || |||||||||||||||||||||    
T  29655738 ctactctagtgcaagctctatcatcttcgggccatggtgattcagaattctatgttattgtttctagtattattta 29655663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 32577220 - 32577045
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||| |||||||||||||||| |  ||| ||| ||| ||||||||||||||| ||||  |||| ||||  |||||||||||||||||||||||  |    
T  32577220 aatatgactgttttggagggggaggtactagccttactcgctgctatttactttgctgatgtaaacatatgggactgggttgtcttcgagtctgactctg 32577121  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||| |||| ||| || ||||||  |||| |||||||| | | || ||| ||| ||||||| ||||||||||||    
T  32577120 ctactctagtgcaagctcaatcgtcagcgggacatggtgattcagaattctatgcgattgtttatagtattattta 32577045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 365
Target Start/End: Complemental strand, 43840501 - 43840305
Alignment:
Q  171 tcaaatgaaatggtagtggacaa-tatgacagttttggagggggaggcaacagc-tttattcgatgctatttactttgcagatgagaacaaatggatctg 268  Q
    ||||| ||||||| || |||||| ||||||||| |||||||||||| ||||| | |||| ||||||| ||| ||||||| |||| |||||||||   | |    
T  43840501 tcaaacgaaatggcagcggacaaatatgacagtgttggagggggagacaacaacctttactcgatgccattcactttgctgatgtgaacaaatgagaccg 43840402  T
Q  269 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattatt 365  Q
    | ||||||||||||  |||| |||||||| | || ||| |||||||||| ||| ||||||||| |   || ||| ||||||||||||||||||||||    
T  43840401 gtttgtcttcgagttcgactcagctactctaatgcaagctctatcgtcttcggaccatggtgattcggaattctatgctattgtttctagtattatt 43840305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 367
Target Start/End: Original strand, 49951328 - 49951503
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||||| |||||||||||||||  ||| ||| |||| ||  || ||||||| |||| ||||| ||||| | | |||||||||||||| ||||       
T  49951328 aatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaacagatggaaccgagttgtcttcgagtccgactcgt 49951427  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||| |||| ||| | |||| ||| |||||| |||||| | | || ||| ||||||||||||||||||||||||    
T  49951428 ctactctagtgcaagctttatcatcttcgggccgtggtgattcagaattctctgctattgtttctagtattattta 49951503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 367
Target Start/End: Original strand, 2064868 - 2065043
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||||| ||| |||||||||||  ||| ||| |||| ||  || ||||||| |||||||||| |||||   |||||||||| ||||| |||| |     
T  2064868 aatatgacagtattgaagggggaggcagtagccttactcgacgcccttcactttgctgatgagaacagatggagtcgggttgtctttgagtcggactcat 2064967  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||| ||   ||| |||||||||||| || |||||||| |  ||| | | ||||||||||||||||||||||||    
T  2064968 ctactctagcccaagctctatcgtctccaggtcatggtgattcgaaattatatgctattgtttctagtattattta 2065043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 367
Target Start/End: Original strand, 28426198 - 28426373
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||| ||||||||||||||||||  ||| ||| ||| ||||||| ||||||| ||||  |||| ||||  | ||||||||||| |||||||||  |    
T  28426198 aatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttcaagtctgactctg 28426297  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
     ||||| ||||  || |||||||||  |||| |||||| | ||| || | | ||| ||||||||||||||||||||    
T  28426298 atactctagtgccagctctatcgtcagcgggacatggtaatttagaattatatgcgattgtttctagtattattta 28426373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 49119572 - 49119397
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||| ||||||||||||||||||  ||| ||| ||| ||||||| ||||||| ||||  |||| ||||  | ||||||||||| |||||||||  |    
T  49119572 aatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttcaagtctgactctg 49119473  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
     ||||| ||||  || |||||||||  |||| |||||| | ||| || | | ||| ||||||||||||||||||||    
T  49119472 atactctagtgccagctctatcgtcagcgggacatggtaatttagaattatatgcgattgtttctagtattattta 49119397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 51735143 - 51734969
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||| ||| ||||||| |||| ||| | || |  | | |||||||||||||| | ||       
T  51735143 aatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctgatgtgaatagataggac-gagttgtcttcgagtcaggctcct 51735045  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||| |||| ||| ||||||||||| || ||||||||| | | || ||| || |||||||||||||||||||||    
T  51735044 ctactctagtgcaagctctatcgtctctggaccatggtgattcataattctatgatattgtttctagtattattta 51734969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 365
Target Start/End: Original strand, 55735024 - 55735197
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||||| |||||||||||||||  ||| ||| |||| ||  || ||||||  | || ||||| ||||| | ||||| | |||||||| || | |     
T  55735024 aatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttgttgttgcgaacacatggaaccgggttattttcgagtccgattcat 55735123  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattatt 365  Q
    |||||| |||| ||| |||||||||| ||| ||||||||| | | || ||| ||||||||||||||||||||||    
T  55735124 ctactctagtgcaagctctatcgtcttcggaccatggtgattcagaattctatgctattgtttctagtattatt 55735197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 367
Target Start/End: Complemental strand, 26422762 - 26422599
Alignment:
Q  204 ttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatgg-atctgggttgtcttcgagtctgacttagctactcgagtg 302  Q
    |||||| ||||||||  ||| ||| ||||||||||||||||||| ||||  |||| |||| ||| |||||||||||||||||||||  | ||||| ||||    
T  26422762 ttggagagggaggcagtagccttactcgatgctatttactttgctgatgtaaacagatgggatc-gggttgtcttcgagtctgactctgatactctagtg 26422664  T
Q  303 taaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
     ||| |||||||||  |||| ||| |||| | | || ||| ||| ||||||| ||||||||||||    
T  26422663 caagctctatcgtcagcgggacatagtgattcagaattctatgcgattgtttttagtattattta 26422599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 331
Target Start/End: Original strand, 56065644 - 56065783
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||||||   || ||| ||||||| ||| ||||||| | || ||| | ||||  | |||||||||||||||| |||| ||    
T  56065644 aatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgctgttgggaatatatgggaccgggttgtcttcgagtccgactcag 56065743  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtga 331  Q
    |||||| |||| |||  ||||| ||||| | |||||||||    
T  56065744 ctactctagtgcaagcgctatcatctccagaccatggtga 56065783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 365
Target Start/End: Complemental strand, 28537944 - 28537786
Alignment:
Q  207 gagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctactcgagtgtaag 306  Q
    ||||||||||||  ||| ||| |||| ||  || ||||||  |||| ||||| ||||  | ||||||| ||| |||| |||| | |||||  |||| |||    
T  28537944 gagggggaggcagtagccttactcgaggcccttcactttgttgatgcgaacagatgggaccgggttgtgttcaagtccgactcatctactttagtgcaag 28537845  T
Q  307 gtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattatt 365  Q
     ||||||||||| |||||||||||| | |||| ||| ||||||||||||||||||||||    
T  28537844 ctctatcgtctctgggccatggtgattcaaaattctatgctattgtttctagtattatt 28537786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 51259624 - 51259527
Alignment:
Q  269 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    ||||||||||||||| |||| |||||||| |||| |||  ||||||||| ||||||||||||| | | || | | || ||||||||||||||||||||    
T  51259624 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtcttcgggccatggtgattcagaattttatgttattgtttctagtattattt 51259527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 367
Target Start/End: Complemental strand, 24990027 - 24989931
Alignment:
Q  270 gttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||||| |||||||||| |||||||| |||| ||| |||| |||||| |||||| ||||| | |||| ||| || ||| |||||||||||||||||    
T  24990027 gttgtctttgagtctgactcagctactctagtgcaagctctaccgtctctgggccacggtgattcaaaattctatgttat-gtttctagtattattta 24989931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 302
Target Start/End: Original strand, 21321542 - 21321652
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||| ||| ||| ||| |||| ||  || ||||| | ||||  |||| ||||  | |||||||||||||||| |||| |     
T  21321542 aatatgacagttttggagggggagacaatagccttactcgaggcccttcacttttctgatgctaacagatgggaccgggttgtcttcgagtccgactcat 21321641  T
Q  292 ctactcgagtg 302  Q
    |||||| ||||    
T  21321642 ctactctagtg 21321652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 367
Target Start/End: Complemental strand, 44936179 - 44936079
Alignment:
Q  267 tgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    |||||||| |||||||| |||| |  ||||| |||| ||  |||||||| | ||||||| ||||| ||| || ||| || ||||||||||| ||||||||    
T  44936179 tgggttgtgttcgagtccgactcatttactctagtgcaaactctatcgttttcgggccacggtgatttagaattctatgttattgtttctattattattt 44936080  T
Q  367 a 367  Q
    |    
T  44936079 a 44936079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 30802163 - 30801988
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||| ||||||||||  ||| ||| | ||||| |||||||||||||||| ||| ||||||  || ||||||||||||||| || | ||    
T  30802163 aatatgacagttttggtgggggaggcagtagccttactagatgccatttactttgcagatgtgaaaaaatgggactaggttgtcttcgagtccgattcag 30802064  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||  |||| ||| |||||||| |||| |||||||||| ||  || ||| || |||||||||||||||||||||    
T  30802063 ctactttagtgcaagctctatcgtttccgagccatggtgacttggaattctatgttattgtttctagtattattta 30801988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 367
Target Start/End: Complemental strand, 15606163 - 15605991
Alignment:
Q  195 atgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagcta 294  Q
    ||||||||||||||||||||||||  ||| ||| ||||||| ||| ||||||  |||| ||||||||||  | ||||||||||| |||| |||| |||||    
T  15606163 atgacagttttggagggggaggcagtagccttactcgatgccattcactttgttgatgggaacaaatgggaccgggttgtcttcaagtccgactcagcta 15606064  T
Q  295 ctcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    ||| |||| ||| |||||||||||  || |||||||| | | ||  || ||||||||||||||||||||||||    
T  15606063 ctctagtgcaagctctatcgtctctaggtcatggtgattcagaacactatgctattgtttctagtattattta 15605991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 367
Target Start/End: Original strand, 28107131 - 28107329
Alignment:
Q  170 ctcaaatgaaatggtagtggaca-atatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatgg-atct 267  Q
    |||||| ||||||| || ||||| ||||||||||||||||||||||||||  ||| ||| | ||||| ||| |||||||| ||  ||| | |||| |||     
T  28107131 ctcaaacgaaatggcagcggacagatatgacagttttggagggggaggcagtagccttacttgatgccattcactttgcaaatatgaatagatgggatca 28107230  T
Q  268 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
     | |||||||||||||| |||  ||||||| |||| ||| |||||||||||||||||||||||| | | || ||| || |||||||||||||||||||||    
T  28107231 cg-ttgtcttcgagtctaactccgctactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgttattgtttctagtattattta 28107329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 19691051 - 19690876
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||| |||||||| |||||||||| ||| ||||||||||  ||| ||||||| |||| ||||| |||   | | ||||||||||||||||||| ||    
T  19691051 aatatgaccgttttggaaggggaggcaatagccttattcgatgtcattcactttgctgatgtgaacagatgtgaccgagttgtcttcgagtctgactcag 19690952  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||  |||| ||| ||||||||||| | | |||||||| ||  || ||| ||  ||||||||||||||||||||    
T  19690951 ctactttagtgcaagctctatcgtctctgagtcatggtgatttggaattctatgtcattgtttctagtattattta 19690876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 367
Target Start/End: Original strand, 14680154 - 14680352
Alignment:
Q  170 ctcaaatgaaatggtagtgg-acaatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 268  Q
    |||||||||||||| || || | ||||||||||| |||||||||||||||  ||| ||| |||| ||  || ||| ||| ||||  |||| ||||| | |    
T  14680154 ctcaaatgaaatggcagcgggaaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactctgctgatgcaaacagatggaaccg 14680253  T
Q  269 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
     |||||||| || || ||||   |||||| | || ||| |||||| |||||||||  |||||| | |||| ||| ||||||||||||||||||||||||    
T  14680254 agttgtctttgattccgactcgtctactctattgcaagctctatcatctccgggcagtggtgattcaaaattctctgctattgtttctagtattattta 14680352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 331
Target Start/End: Complemental strand, 15053347 - 15053208
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||| ||| |||||||||||||||  ||| ||| ||||||| |||  | |||| || | ||| |||||   |  ||||||||||||||| |||| ||    
T  15053347 aatatgatagtgttggagggggaggcagtagccttactcgatgccattcgccttgctgacgtgaaaaaatgagacaaggttgtcttcgagtccgactcag 15053248  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtga 331  Q
    |||||| |||| ||   ||||||||| |||||||||||||    
T  15053247 ctactctagtgcaaacgctatcgtcttcgggccatggtga 15053208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 34104539 - 34104463
Alignment:
Q  290 agctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    |||||||| |||| |||  ||||||||||||| ||||||||| | | || | | ||||||||||| |||||||||||    
T  34104539 agctactctagtgcaagcgctatcgtctccggaccatggtgattcagaattttatgctattgtttttagtattattt 34104463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 192 - 367
Target Start/End: Original strand, 7127238 - 7127413
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||| ||||||||||||||||| |  ||| ||| ||||||||||| ||||||| |||| ||||| ||||  | |||||| ||||||||||||||  |    
T  7127238 aatatgaaagttttggagggggaggtagtagccttactcgatgctattcactttgctgatgtgaacagatgggaccgggttgccttcgagtctgactatg 7127337  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||  |||| ||| ||| |||||||||||||||||||| |||  | ||| || ||||||||| |||||||||||    
T  7127338 ctactttagtgcaagctctttcgtctccgggccatggtgatttagtattctatgttattgtttcaagtattattta 7127413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 185762 - 185588
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||||||||||||||| ||| |  ||| ||| ||||| ||||| ||||||  |||| ||| | ||||| | ||||||||| |||||||||||  |    
T  185762 aatatgacagttttggagggg-aggaagtagccttactcgatactattcactttgttgatgtgaatagatggaaccgggttgtctacgagtctgactctg 185664  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||  |||| ||| ||| |||||||||| ||||||||| | | || ||| ||||||||||||||||||||||||    
T  185663 ctactttagtgcaagctctttcgtctccggaccatggtgattcagaattctatgctattgtttctagtattattta 185588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 363
Target Start/End: Original strand, 23853947 - 23854118
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||| ||||||  ||| ||| | || || ||| ||||||  ||||  |||| |||   ||| |||||||||||||| |||| |     
T  23853947 aatatgacagttttggagggtgaggcagtagccttacttgaggccattcactttgttgatgctaacagatgagactgagttgtcttcgagtccgactcat 23854046  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtatta 363  Q
    | |||| |||| ||| |||||||||||||||||||||||| | | || ||| ||||||||||||||||||||    
T  23854047 caactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgctattgtttctagtatta 23854118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 331
Target Start/End: Complemental strand, 478228 - 478089
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||| ||| |||||||  ||| ||| | ||||  | ||||| ||||||| |||||||       
T  478228 aatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctaatgtgaatagatgggaccgggttatcttcgaatctgactcta 478129  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtga 331  Q
    |||||| |||| ||| |||||||||||||||  |||||||    
T  478128 ctactctagtgcaagctctatcgtctccgggttatggtga 478089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 367
Target Start/End: Complemental strand, 598333 - 598234
Alignment:
Q  268 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    ||||||||||| |||| ||||||||||||| |||| ||| |||||||||| | || |||||||| |  ||  ||| ||||||||||||||||||||||||    
T  598333 gggttgtcttcaagtcggacttagctactctagtgcaagctctatcgtcttcaggtcatggtgattcgaagttctatgctattgtttctagtattattta 598234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 331
Target Start/End: Complemental strand, 8451295 - 8451156
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||||| |||||||||||||||  ||||||| ||||| | ||| |||| || |||| ||||  ||||  | ||||||||||||||||||||| |     
T  8451295 aatatgacagtgttggagggggaggcagtagctttactcgattccattcacttcgctgatgtgaacggatgggaccgggttgtcttcgagtctgactcat 8451196  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtga 331  Q
    |||||  |||| ||| | |||||||||| || ||||||||    
T  8451195 ctactttagtgcaagctttatcgtctccaggtcatggtga 8451156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 367
Target Start/End: Complemental strand, 40588826 - 40588727
Alignment:
Q  268 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||||||| |||||||| | | |||||| |||||||  ||||||||| |||||||||| ||| |   || ||| ||||||||||| ||||||||||||    
T  40588826 gggttgtctttgagtctgattcatctactctagtgtaaactctatcgtccccgggccatgatgattctgaattctatgctattgtttatagtattattta 40588727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 367
Target Start/End: Complemental strand, 3606795 - 3606736
Alignment:
Q  308 tctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    ||||||||||| ||| |||||||| ||  || ||| ||||||||||||||||||||||||    
T  3606795 tctatcgtctcagggtcatggtgacttggaattctatgctattgtttctagtattattta 3606736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 367
Target Start/End: Original strand, 13415015 - 13415213
Alignment:
Q  170 ctcaaatgaaatggtagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaat-ggatct 267  Q
    |||||| ||||||| || |||||| |||||||||||||||||||||||||  ||| ||| |||| ||  ||   ||||| ||||  |||| || |||||     
T  13415015 ctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatc- 13415113  T
Q  268 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    | |||||||| ||||| || |   |||||| |||| ||||| ||||||| |||||||||||||| |   || | | ||||||||||| ||||||||||||    
T  13415114 gagttgtctttgagtccgattcttctactctagtgcaaggtatatcgtccccgggccatggtgattctgaattttatgctattgtttttagtattattta 13415213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 33642859 - 33642761
Alignment:
Q  269 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||||||| ||||  ||| | |||||| | || ||| ||| |||||||||||||||||||| | | || ||  || |||||||||||||||||||||    
T  33642859 ggttgtcttcaagtccaactcatctactctaatgcaagctctgtcgtctccgggccatggtgattcagaattcaatgatattgtttctagtattattta 33642761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 9496791 - 9496823
Alignment:
Q  186 gtggacaatatgacagttttggagggggaggca 218  Q
    |||||||||||||||||||||||||| ||||||    
T  9496791 gtggacaatatgacagttttggagggtgaggca 9496823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 192 - 367
Target Start/End: Original strand, 25730823 - 25730998
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||||||  ||| ||| |||| ||  || ||||||| |||| ||||| ||||  ||| |||||||||||||| |||| |     
T  25730823 aatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaacagatgggactgagttgtcttcgagtccgactcat 25730922  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||| |||| ||| ||||||||||| ||| |||||||| | | || ||| || |||||||||||||||||||||    
T  25730923 ctactctagtgcaagctctatcgtctcagggtcatggtgattaagaattctatgttattgtttctagtattattta 25730998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 366
Target Start/End: Original strand, 8388101 - 8388275
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||||||   || ||| ||||||| ||| ||||||| | || ||||| ||||  | |||||||||||||||| |||| ||    
T  8388101 aatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgcggttgggaacagatgggaccgggttgtcttcgagtccgactcag 8388200  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    |||||| |||| |||  ||||||||||| ||||||||||| | | || | | |||||||||||| ||||||||||    
T  8388201 ctactctagtgcaagcgctatcgtctccaggccatggtgattcagaattttatgctattgtttccagtattattt 8388275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 364
Target Start/End: Original strand, 20204970 - 20205142
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||||| |||||||||||||||  ||| ||| |||| || ||| ||||||  | || ||||| ||||| | | |||||||||||||| |||| |     
T  20204970 aatatgacagtattggagggggaggcagtagccttactcgaggccattcactttgttgttgcgaacagatggaaccgagttgtcttcgagtccgactcat 20205069  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattat 364  Q
    |||||| |||| ||| |||||| |||||||| |||||||| | |||| ||| |||||||||||||||||||||    
T  20205070 ctactctagtgcaagctctatcctctccgggtcatggtgattcaaaattctatgctattgtttctagtattat 20205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 170 - 367
Target Start/End: Complemental strand, 27533101 - 27532903
Alignment:
Q  170 ctcaaatgaaatggtagt-ggacaatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 268  Q
    |||||| ||||||||||  ||| ||||| |||||||||||||||||||||| ||||||||||||||  ||| ||||||| |||| ||| | ||||  | |    
T  27533101 ctcaaacgaaatggtagcaggaaaatataacagttttggagggggaggcaatagctttattcgatgtcattcactttgctgatgtgaatagatgggaccg 27533002  T
Q  269 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||| |||||||| ||||| ||| ||  |||| |   | ||||||||||||| |||||||| | | || ||| |||||||||||| |||||||||||    
T  27533001 ggttgttttcgagtccgactttgcttctttagtgcagactttatcgtctccgggtcatggtgattcagaattctttgctattgtttcaagtattattta 27532903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 368
Target Start/End: Complemental strand, 41940908 - 41940733
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||| ||| ||| ||| || |||  ||| |||||||  ||| |||||| |||| | |||||||||||||||| |||| |     
T  41940908 aatatgacagttttggagggggagacaatagccttactcaatgtcattcactttgctcatgtgaacaactggacc-gggttgtcttcgagtccgactcaa 41940810  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattatttac 368  Q
    |||||| |||| ||  ||||||||||| || |||| |||| | | || ||| |||||||||||||||||||||||||    
T  41940809 ctactctagtgcaaactctatcgtctctggaccattgtgattcagaattctatgctattgtttctagtattatttac 41940733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 367
Target Start/End: Complemental strand, 15988944 - 15988746
Alignment:
Q  170 ctcaaatgaaatggtagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 268  Q
    |||||| ||||||| || |||||| |||||||||||||||||||||||||  | | ||| |||| ||  |||||||||| |||| ||||| ||||  | |    
T  15988944 ctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggcagtaaccttactcgaggccctttactttgctgatgcgaacatatgggaccg 15988845  T
Q  269 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||||||| |||| | || |||||||| |||| ||  |||||||||| | ||||||||||| |   || ||| || |||||||||||||||||||||    
T  15988844 ggttgtcttcaagtccgtctcagctactctagtgcaatctctatcgtcttcaggccatggtgattcggaattctatgttattgtttctagtattattta 15988746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 366
Target Start/End: Complemental strand, 26597629 - 26597455
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||| |||||||||||||||||   || ||| ||||||| ||| ||||||||| || ||| | |||   | |||||||||||||||| |||| ||    
T  26597629 aatatgacaattttggagggggaggcagttgccttactcgatgccattcactttgcagttgggaatagatgagaccgggttgtcttcgagtccgactcag 26597530  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    |||||| |||| |||  ||||||||||||||||||||||| |   || | | || ||||||||||||||||||||    
T  26597529 ctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgttattgtttctagtattattt 26597455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 363
Target Start/End: Original strand, 4268114 - 4268285
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||||||  ||| ||| | || ||  || ||||||| ||||  ||||  |||  | ||||| |||||||||| |||| |     
T  4268114 aatatgacagttttggagggggaggcagtagccttactagaggcccttcactttgctgatgctaacaggtgggaccgggttttcttcgagtccgactcat 4268213  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtatta 363  Q
    |||||| |||| ||| |||||| ||||||||||||||||| |   || ||| ||||||||||||||||||||    
T  4268214 ctactctagtgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctagtatta 4268285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 366
Target Start/End: Original strand, 12660331 - 12660505
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||||| || ||| ||||||||  ||  ||| ||||||  ||| |||||||  ||| |||||||||   | | ||| || |||||||||||| ||    
T  12660331 aatatgacagtgttagagcgggaggcagtagtcttactcgatgtcattcactttgctaatgtgaacaaatgagaccgtgttatcgtcgagtctgactcag 12660430  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    |||||| |||| ||| |||||||||| ||||||| ||||| | | || ||| || ||||||||||||||||||||    
T  12660431 ctactctagtgcaagctctatcgtcttcgggccacggtgattcagaattctatgatattgtttctagtattattt 12660505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 27292458 - 27292620
Alignment:
Q  201 gttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctactcgag 300  Q
    |||||| |||||||||||| ||| ||| | |||||  || ||||||| ||||| |||| ||||  | |||||||||||||||  |||| | || ||| ||    
T  27292458 gttttgaagggggaggcaatagccttactagatgcccttcactttgctgatgataacagatgggaccgggttgtcttcgagttcgactcatctgctctag 27292557  T
Q  301 tgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtatta 363  Q
    || ||  |||||||||||| ||||||||||| ||  || | | ||||||||||||||||||||    
T  27292558 tgcaaactctatcgtctccaggccatggtgatttggaattttatgctattgtttctagtatta 27292620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 22767429 - 22767292
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||| ||||||||||||||||||  ||| ||| ||| ||||||| ||||||| ||||  |||| ||||  | ||||||||||||||| |||||  |    
T  22767429 aatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttcgagtttgactctg 22767330  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggt 329  Q
     ||||| |||| ||| |||||||||  |||| ||||||    
T  22767329 atactctagtgcaagctctatcgtcagcgggacatggt 22767292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 34652426 - 34652251
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatgg-atctgggttgtcttcgagtctgactta 290  Q
    ||||||||||| ||| | ||||||  || | | ||| ||||||| ||| ||||||| |||| ||||| |||| ||| |||||||||||||| | ||||      
T  34652426 aatatgacagtgttgtaaggggagataataaccttactcgatgccattcactttgccgatgtgaacagatgggatc-gggttgtcttcgagcccgactcg 34652328  T
Q  291 gctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
     |||||| |||| ||| |||| |||||| |||||||||||| | | || | | || |||||||||||||||||||||    
T  34652327 actactctagtgcaagctctaccgtctctgggccatggtgattcagaattatatgttattgtttctagtattattta 34652251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 32632606 - 32632705
Alignment:
Q  268 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||||||| |||||||||| | |||||  |||||||| | ||||||||||| ||||| |||| | | || ||| ||  |||||||||| |||||||||    
T  32632606 gggttgtctttgagtctgactcatctactttagtgtaagctttatcgtctccgagccatagtgattcagaattctatgacattgtttctaatattattta 32632705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 192 - 366
Target Start/End: Original strand, 25682666 - 25682840
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||||| |||||||||||||||  ||| ||| ||||||  ||| |||||||  ||| ||||| ||||  | ||| ||||||||||| ||||| ||    
T  25682666 aatatgacagtgttggagggggaggcagtagccttactcgatgtcattcactttgctaatgtgaacagatgggaccgggctgtcttcgagtttgactcag 25682765  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    |||||| |||  ||| ||||||||||||||||||  |||| ||| || ||| | |||||||||||||||||||||    
T  25682766 ctactctagtacaagctctatcgtctccgggccacagtgatttagaattctatactattgtttctagtattattt 25682840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 367
Target Start/End: Original strand, 36733711 - 36733886
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||| ||||||||||||||||||||  ||  ||| || ||| |||| ||||||| |||| ||||||||||  | |||||||||||||||||||||       
T  36733711 aatatggcagttttggagggggaggcagtagtcttactcaatgttattcactttgctgatgtgaacaaatgggaccgggttgtcttcgagtctgactcta 36733810  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
      |||| |||| ||| | |||||||||||||||||| ||| | | || ||| || |||||||||||||||||||||    
T  36733811 taactctagtgcaagctatatcgtctccgggccatgatgattcataattctatgttattgtttctagtattattta 36733886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 367
Target Start/End: Original strand, 44602767 - 44602942
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||| |||||||||||||| ||  ||  ||| ||||||  ||| ||||| | |||| ||||| |||   | |||||| |||||||||| |||  |    
T  44602767 aatatgacaattttggagggggagacattagtcttactcgatgtcattcactttactgatgtgaacagatgagaccgggttgccttcgagtctaactccg 44602866  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||| |||| ||| |||||| ||||||||||||||||| | |||| ||| ||||||||||||||||||||||||    
T  44602867 ctactctagtgcaagctctatcatctccgggccatggtgattcaaaattctatgctattgtttctagtattattta 44602942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 363
Target Start/End: Original strand, 44527268 - 44527439
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||||||  ||| ||| | || ||  || ||||||| ||||  |||| ||||  | |||||||||||||||| |||| |     
T  44527268 aatatgacagttttggagggggaggcagtagccttactagaggcccttcactttgctgatgctaacagatgggaccgggttgtcttcgagtccgactcat 44527367  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtatta 363  Q
    ||||||  ||| ||| |||||| ||||||||||||||||| |   || ||| ||||||||||||||||||||    
T  44527368 ctactcttgtgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctagtatta 44527439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 366
Target Start/End: Complemental strand, 48949896 - 48949722
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||| |||||||||||||||||||   || ||| ||||||| ||| ||||||  | || ||||| ||||  | |||||||||||||||   ||| ||    
T  48949896 aatatgaaagttttggagggggaggcagttgccttactcgatgcgattcactttgttgttgggaacagatgggaccgggttgtcttcgagttcaactcag 48949797  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    |||||| |||| |||  ||||||||||||||||||||||| |   || | | |||||||||||||||||||||||    
T  48949796 ctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttctagtattattt 48949722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 366
Target Start/End: Original strand, 51113330 - 51113504
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||| || ||||||||||||||||||   || ||| ||||||  ||| ||||||  | || ||||| ||||  | |||||||||||||||| |||| ||    
T  51113330 aatataaccgttttggagggggaggcagttgccttactcgatgtcattcactttgttgttgggaacagatgggaccgggttgtcttcgagtccgactcag 51113429  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattt 366  Q
    |||||| |||| |||  |||||||||| |||||||||||| |   |  | | |||||||||||||||||||||||    
T  51113430 ctactctagtgcaagcgctatcgtctctgggccatggtgattcggagttttatgctattgtttctagtattattt 51113504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 2885314 - 2885413
Alignment:
Q  268 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||||||||||||| |||| |||||||| |||| ||| |||||||||| ||||| ||||||| |   |  | | ||||||||||||||||||||||||    
T  2885314 gggttgtcttcgagtcagactcagctactctagtgcaagctctatcgtcttcgggctatggtgattcggagttatatgctattgtttctagtattattta 2885413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 5609430 - 5609529
Alignment:
Q  268 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||||||||||||  |||| | |||||| |||| ||  ||||||||||| ||| |||||||| | | || ||| ||||||||||||||||||||||||    
T  5609430 gggttgtcttcgagttcgactcatctactctagtgcaaactctatcgtctcagggtcatggtgattcagaattctatgctattgtttctagtattattta 5609529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 48166252 - 48166357
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaat-ggatctgggttgtcttcgagtctgactta 290  Q
    |||||||||||||||||| ||||| ||| ||| ||| ||||||  ||| |||||||  ||| ||| | || ||||| ||||||||||||||||||| | |    
T  48166252 aatatgacagttttggagtgggagacaatagccttactcgatgtcattcactttgcttatgtgaatatatgggatc-gggttgtcttcgagtctgattca 48166350  T
Q  291 gctactc 297  Q
    |||||||    
T  48166351 gctactc 48166357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 367
Target Start/End: Original strand, 88551 - 88749
Alignment:
Q  170 ctcaaatgaaatggtagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 268  Q
    |||||||||||||| | ||| ||| |||||||||||||||||||||||||  ||| ||| |||| ||  || ||||||  ||||  |||| ||||  | |    
T  88551 ctcaaatgaaatggcaatgggcaaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgttgatgctaacagatgggaccg 88650  T
Q  269 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    ||||||||||||||| |||| | |||||| |||| ||| |||||||||||  |  |||||||| | | || ||| |||||||||||| |||||||||||    
T  88651 ggttgtcttcgagtccgactcatctactctagtgcaagctctatcgtctcaagatcatggtgattcagaattctatgctattgtttccagtattattta 88749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 26198778 - 26198873
Alignment:
Q  273 gtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattatttac 368  Q
    ||||||||||| |||| |||||||| |||| ||| |||||||||||  || |||||||| || ||| ||| |||||||||||||||||||||||||    
T  26198778 gtcttcgagtccgactcagctactctagtgcaagctctatcgtctctaggtcatggtgaattgaaattctatgctattgtttctagtattatttac 26198873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 368
Target Start/End: Complemental strand, 34696076 - 34695900
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||||||  ||| ||| || | || ||| ||||||| ||||  || | ||||    |||||||||||||||| ||||  |    
T  34696076 aatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtcaatagatgggaacgggttgtcttcgagtccgactccg 34695977  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattatttac 368  Q
    |||||| |||| |||   ||||||||||||| |||||||| | | || | | |||||||||||||||||| ||||||    
T  34695976 ctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaattttatgctattgtttctagtataatttac 34695900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 368
Target Start/End: Complemental strand, 34718488 - 34718312
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    |||||||||||||||||||||||||||  ||| ||| || | || ||| ||||||| ||||  || | ||||    |||||||||||||||| ||||  |    
T  34718488 aatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtcaatagatgggaacgggttgtcttcgagtccgactccg 34718389  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattatttac 368  Q
    |||||| |||| |||   ||||||||||||| |||||||| | | || | | |||||||||||||||||| ||||||    
T  34718388 ctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaattttatgctattgtttctagtataatttac 34718312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 367
Target Start/End: Complemental strand, 1418079 - 1417978
Alignment:
Q  266 ctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattatt 365  Q
    ||||||||||||||||||||||| | |||||| |||  ||| ||||| ||||| || | ||||||| | | || ||| ||||||||||||||||||||||    
T  1418079 ctgggttgtcttcgagtctgactcatctactctagttcaagctctattgtctctggactatggtgattcagaattctatgctattgtttctagtattatt 1417980  T
Q  366 ta 367  Q
    ||    
T  1417979 ta 1417978  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 9710046 - 9710145
Alignment:
Q  268 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||||||||||||||||||| | ||||| |||| ||| |||||||||  |||| |||||| | | | || ||| ||| ||||||||||||||||||||    
T  9710046 gggttgtcttcgagtctgactttgatactctagtgcaagctctatcgtcagcgggacatggtaattcataattctatgcaattgtttctagtattattta 9710145  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 12130810 - 12130635
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||| ||| |||||||||||||||  ||| ||| | || ||| || ||||||| ||||  || | |||||   ||||| ||||||||||||||| |     
T  12130810 aatatgatagtgttggagggggaggcagtagccttacttgaggctcttcactttgctgatgcaaatagatggaatcgggttatcttcgagtctgactcat 12130711  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||| |||  ||| |||||| ||| |||| |||||||| | | || ||| ||||||| ||||||||||||||||    
T  12130710 ctactctagtccaagctctatcatcttcgggacatggtgattcagaattctatgctattatttctagtattattta 12130635  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 22845600 - 22845723
Alignment:
Q  241 actttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaat 340  Q
    ||||||| |||| ||||| ||||  | ||||||||||||||||  ||| | |||||| |||| ||| |||||||||||| |  |||||||| | | || |    
T  22845600 actttgctgatgcgaacagatgggaccgggttgtcttcgagtccaactaatctactctagtgcaagctctatcgtctccagatcatggtgattcagaatt 22845699  T
Q  341 ctgtgctattgtttctagtattat 364  Q
    ||  ||||||||||||||||||||    
T  22845700 ctaggctattgtttctagtattat 22845723  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 13109964 - 13109866
Alignment:
Q  269 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    ||||||||||||||| ||||   |||||| |||| ||| |||||||||| ||||||||||||| ||  || | |  ||||||||||| |||||||||||    
T  13109964 ggttgtcttcgagtccgactcttctactctagtggaagctctatcgtcttcgggccatggtgatttggaattataagctattgtttccagtattattta 13109866  T

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Target: scaffold0446 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 331
Target Start/End: Original strand, 201 - 340
Alignment:
Q  192 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 291  Q
    ||||||||||||| |||||||||||||   || ||| ||||||| ||| ||||||| | || ||| | ||||  | |||||||||||||||| |||| ||    
T  201 aatatgacagtttgggagggggaggcagttgccttactcgatgccattcactttgctgttgggaatatatgggaccgggttgtcttcgagtccgactcag 300  T
Q  292 ctactcgagtgtaaggtctatcgtctccgggccatggtga 331  Q
    |||||| |||| |||  ||||| ||||| | |||||||||    
T  301 ctactctagtgcaagcgctatcatctccagaccatggtga 340  T

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Target: scaffold0922 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 367
Target Start/End: Complemental strand, 352 - 261
Alignment:
Q  276 ttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgagttaaaaatctgtgctattgtttctagtattattta 367  Q
    |||||||| |||| | |||||| |||| ||| |||||| ||||| || |||||| | | | || ||| ||||||||||||||||||||||||    
T  352 ttcgagtccgactcatctactctagtgcaagctctatcatctccaggtcatggtaattcagaattctatgctattgtttctagtattattta 261  T

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