View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17154_low_10 (Length: 302)
Name: NF17154_low_10
Description: NF17154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17154_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 49388148 - 49388426
Alignment:
| Q |
18 |
agtcttttcaaattggccattcaaatcatcttcgaattccaagaaataagaacttcttcgtgatttgcagttttcaatgtaaagatcggttttcttcgtg |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |
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| T |
49388148 |
agtcttttcaaattggccattcaaatcatctttgaattccaagaaataagaacttcttcatgatttgcagttttcaacgtaaagatcgattttcttcgtg |
49388247 |
T |
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| Q |
118 |
agttcagcaaaataagagcttccaatagttgcagcccaggctttgcatacaagccagagttatacagaaaattaagaggaaccaaagtaaagatacaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
49388248 |
agttcagcaaaataagagcttccaatagttgcagcccaagctttgcatacaagtcagagttatacaggaaattaagaggaaccaaaataaagatacaaag |
49388347 |
T |
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| Q |
218 |
caacaagtctttagggagaagcagctttgaaatcactttataactcttagtactatttgagttttggttcatattcttc |
296 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49388348 |
caacaagtcttcagggagaagcagctttgaaatcactttataactctcagtactatttgagttttggttcatattcttc |
49388426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 2327146 - 2327255
Alignment:
| Q |
187 |
aattaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactcttagtactatttgagttttggtt |
286 |
Q |
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||||||||||||| |||||||||||| || | |||||||| | | ||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
2327146 |
aattaagaggaacaaaagtaaagatatgaaacctcaagtcttcaagtagaagcaactttgaaatcattttacaactcttagtactatttgagttttggtt |
2327245 |
T |
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| Q |
287 |
catattcttc |
296 |
Q |
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| | |||||| |
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| T |
2327246 |
cttgttcttc |
2327255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 296
Target Start/End: Complemental strand, 39571633 - 39571528
Alignment:
| Q |
188 |
attaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactcttagtactatttgagttttggttc |
287 |
Q |
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|||||||||||||||| |||||||| || ||| || |||| |||||| |||| |||||||||||||||| |||||| |||||||||||||||| || |
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| T |
39571633 |
attaagaggaaccaaactaaagatatcaaacaataaatcttcagggagcagcaactttgaaatcactttacaactct---tactatttgagttttgattt |
39571537 |
T |
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| Q |
288 |
atattcttc |
296 |
Q |
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||||||||| |
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| T |
39571536 |
atattcttc |
39571528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 39575640 - 39575534
Alignment:
| Q |
187 |
aattaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactcttagtactatttgagttttggtt |
286 |
Q |
| |
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||||||||||||||||| | |||||| || ||||| ||||| |||||| |||| |||| |||| ||||| |||||| |||||||||||||||| || |
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| T |
39575640 |
aattaagaggaaccaaactgaagatatcaaacaacaggtcttcagggagcagcacttttggaatctctttacaactct---tactatttgagttttgatt |
39575544 |
T |
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| Q |
287 |
catattcttc |
296 |
Q |
| |
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||||||||| |
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| T |
39575543 |
tatattcttc |
39575534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 9841457 - 9841404
Alignment:
| Q |
18 |
agtcttttcaaattggccattcaaatcatcttcgaattccaagaaataagaact |
71 |
Q |
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|||| ||||||||||| |||||| |||||||| |||||||||||||||||||| |
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| T |
9841457 |
agtcctttcaaattggtcattcacatcatctttaaattccaagaaataagaact |
9841404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 9846536 - 9846483
Alignment:
| Q |
18 |
agtcttttcaaattggccattcaaatcatcttcgaattccaagaaataagaact |
71 |
Q |
| |
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|||| ||||||||||| |||||| |||||||| |||||||||||||||||||| |
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| T |
9846536 |
agtcctttcaaattggtcattcacatcatctttaaattccaagaaataagaact |
9846483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 9902227 - 9902141
Alignment:
| Q |
182 |
cagaaaattaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactcttagt |
268 |
Q |
| |
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|||| ||| ||||||||||||||||| |||| ||| || |||||||| ||| || | || ||||||||| |||| | |||||||||| |
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| T |
9902227 |
cagacaatcaagaggaaccaaagtaaggatataaaacatcaagtcttcaggaagcaacacctttgaaattacttcacaactcttagt |
9902141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 9841266 - 9841190
Alignment:
| Q |
190 |
taagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactctta |
266 |
Q |
| |
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|||||||||||||||||| || | || ||||||||||| | | || | || |||||||||||||||| |||||||| |
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| T |
9841266 |
taagaggaaccaaagtaaggacatgaaacaacaagtcttcaagaagcaacaactttgaaatcactttacaactctta |
9841190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 5054816 - 5054864
Alignment:
| Q |
23 |
tttcaaattggccattcaaatcatcttcgaattccaagaaataagaact |
71 |
Q |
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|||||||||||||||||| || |||| ||||||||||||||||||||| |
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| T |
5054816 |
tttcaaattggccattcacattgtctttgaattccaagaaataagaact |
5054864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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