View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17154_low_16 (Length: 270)
Name: NF17154_low_16
Description: NF17154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17154_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 3191350 - 3191599
Alignment:
| Q |
1 |
aactaatatccaatataaccaagaggtagtgtgggatacaacggaaactcatggatatgcctgtgtatagcaagtcatatccaaaatggatggatggaat |
100 |
Q |
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| T |
3191350 |
aactaatatccaatataaccaagaggtagtgtgggatacaactgaaactcatggatatgcctgtgtatagcaagtcatatccaaaatggatggatggaat |
3191449 |
T |
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| Q |
101 |
gatgcctctccacataggttataaatctacaatggatcatatcagtatattcacaacctagtgcattgagggaaccaaaacgagttccataagttagagt |
200 |
Q |
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| T |
3191450 |
ggtgcctctccacataggttataaatctacaatggatcatatcagtatattcacaaccaagtgcattgagggaaccaaaacgagttccataagttagagt |
3191549 |
T |
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| Q |
201 |
tgttccctttatcattaatagaaacaaccttctcatggcactcttaccttc |
251 |
Q |
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| T |
3191550 |
tgtt-cctttatcattaatagaaacaactttctcatggcactcttaccttc |
3191599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 3213255 - 3213479
Alignment:
| Q |
27 |
tagtgtgggatacaacggaaactcatggatatgcctgtgtatagcaagtcatatccaaaatggatggatggaatgatgcctctccacataggttataaat |
126 |
Q |
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| T |
3213255 |
tagtttgggatacaactgaaacccatggatatgcttgtgtatagcaagtcatatccaaaatggatggatagaatgtt-cctttctcaataggttataaat |
3213353 |
T |
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| Q |
127 |
ctacaatggatcatatcagtatattcacaacctagtgcattga-gggaaccaaaacgagttccataagttagagttgttccctttatcattaatagaaac |
225 |
Q |
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| T |
3213354 |
cgacaatggatcatatcggtatattcacaacctagtgcattgaggggaaccaacacaggttccataagttggagttgttccctttatcgttaataggaac |
3213453 |
T |
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| Q |
226 |
aaccttctcatggcactcttaccttc |
251 |
Q |
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| T |
3213454 |
agccttctcatgatactctttccttc |
3213479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 50 - 227
Target Start/End: Original strand, 3208303 - 3208481
Alignment:
| Q |
50 |
catggatatgcctgtgtatagcaagtcatatccaaaatggatggatggaatgatgcctctccacataggttataaatctacaatggatcatatcagtata |
149 |
Q |
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| T |
3208303 |
catggatatgcatatatatagcaagtcatatccaaaatggatggatagaatggtgcctctccacatgagttataaatcgatactggatcatattagtata |
3208402 |
T |
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| Q |
150 |
ttcacaacctagtgcatt-gagggaaccaaaacgagttccataagttagagttgttccctttatcattaatagaaacaa |
227 |
Q |
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| T |
3208403 |
ttcacaacctagtgcattggggggaaccaaaacgagttccataagttggacttgttctccttatcactaatagaaacaa |
3208481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 9511150 - 9511209
Alignment:
| Q |
10 |
ccaatataaccaagaggtagtgtgggatacaacggaaactcatggatatgcctgtgtata |
69 |
Q |
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| T |
9511150 |
ccaatataatcaagaggtagtttgggatacaacggaaattagtggataggcatgtgtata |
9511209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 34184824 - 34184892
Alignment:
| Q |
170 |
gggaaccaaaacgagttccataagttagagttgttccctttatcattaatagaaacaaccttctcatgg |
238 |
Q |
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| T |
34184824 |
gggaaccagaacgagttccataagttgcaactattccctttatcatggataggaacgaccttctcatgg |
34184892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 15221834 - 15221786
Alignment:
| Q |
34 |
ggatacaacggaaactcatggatatgcctgtgtatagcaagtcatatcc |
82 |
Q |
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| T |
15221834 |
ggatacaactgaaacccatggatatgccaatgtataggaagtcatatcc |
15221786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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