View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17154_low_18 (Length: 252)
Name: NF17154_low_18
Description: NF17154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17154_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 39950937 - 39950806
Alignment:
| Q |
99 |
acgatattgcaacggaaggcaactctatactactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaagaag |
198 |
Q |
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| T |
39950937 |
acgatattgcaacggaaggcaactctatactactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaagaag |
39950838 |
T |
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| Q |
199 |
aaggttatgctgatgttcataagtgtaggcac |
230 |
Q |
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| T |
39950837 |
aaggttatgctgatgttcataagtgtaggcac |
39950806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 39951291 - 39951238
Alignment:
| Q |
43 |
aagaaatacgcatcaattcttactgtaaaagccacagctaaaaacaaaagctat |
96 |
Q |
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| T |
39951291 |
aagaaatgcgcatcaagtcttactgtaaaagccacagctaaaaacaaaagctat |
39951238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 46402298 - 46402169
Alignment:
| Q |
101 |
gatattgcaacggaaggcaactctatactactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaagaagaa |
200 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46402298 |
gatattgcaacggaaggaaactctataccactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaaggagaa |
46402199 |
T |
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| Q |
201 |
ggttatgctgatgttcataagtgtaggcac |
230 |
Q |
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| T |
46402198 |
ggttatactgatgctcataagtgtaggcac |
46402169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 17113678 - 17113781
Alignment:
| Q |
129 |
tactctatgagtaacatctcaccagaagtctgaatggttcttcagccat--tttagcagccaaaccaagaagaaggttatgctgatgttcataagtgtag |
226 |
Q |
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||||| || ||||| |||||||||||| |||||||||||||| | ||| | ||||| |||||||||| |||||||||| ||||| |||||||| ||| |
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| T |
17113678 |
tactccattagtaatatctcaccagaaatctgaatggttctttaaacattatatagcacccaaaccaaggagaaggttatattgatgctcataagtttag |
17113777 |
T |
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| Q |
227 |
gcac |
230 |
Q |
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|||| |
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| T |
17113778 |
gcac |
17113781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 27743521 - 27743626
Alignment:
| Q |
101 |
gatattgcaacggaaggcaactctatactactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaagaagaa |
200 |
Q |
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||||||||||| |||| |||||||| |||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
27743521 |
gatattgcaacagaagataactctattctactcgatcagtaacatctcaccagaagtatgaatggttcttcagacattttagcagccaaaccaaggagaa |
27743620 |
T |
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| Q |
201 |
ggttat |
206 |
Q |
| |
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|||||| |
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|
| T |
27743621 |
ggttat |
27743626 |
T |
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