View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17154_low_2 (Length: 713)

Name: NF17154_low_2
Description: NF17154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17154_low_2
NF17154_low_2
[»] chr2 (1 HSPs)
chr2 (13-713)||(39300304-39300997)


Alignment Details
Target: chr2 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 13 - 713
Target Start/End: Complemental strand, 39300997 - 39300304
Alignment:
Q  13 caaaggcaaaacaaaattatgtatggattagtccacacaaaatnnnnnnnnntcattgacactctaaagattcaaacttgagatttgaatgaatgacagt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||         |||  ||||||||||||||||||||||||||||||||||||| ||| |    
T  39300997 caaaggcaaaacaaaattatgtatggattagtccacacaaaataaaaaaaa-tcagggacactctaaagattcaaacttgagatttgaatgaatcacact 39300899  T
Q  113 ctaaatataattgttcaaaaataacccacaacaaaaggaagatcgaattgaatattcttgaatcaccaataaactgttaaatcatttattgagaccaggt 212  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300898 ctaaatataattgttcaaaaataagccacaacaaaacgaagatcgaattgaatattcttgaatcaccaataaactgttaaatcatttattgagaccaggt 39300799  T
Q  213 gtcttccattgatctgcagtgtacctctttctaccaagcacaaactcatacgaggcactccttcaatcttccacgtgtctttaaacacgaaaaaccagcc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39300798 gtcttccattgatctgcagtgtacctctttctaccaagcacaaactcatacgaggcaatccttcaatcttccacgtgtctttaaacacgaaaaaccagcc 39300699  T
Q  313 tcgtctcatccaatcatcctaatccatctatattttaattttcattattataagctgagtcacaatatccaatttcacaacattcacacgtgtcattaat 412  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  39300698 tcgtttcatccaatcatcctaatccatctatattttaattttcattattataagctgagtcacaatatccaatttcacaccattcacacgtgttattaat 39300599  T
Q  413 cactgtttcttattccacatgtcatactccatgcaaaacatatccaccacaaacctcttcaaaccgccaatacctttctccttttaaatcacacaacatt 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300598 cactgtttcttattccacatgtcatactccatgcaaaacatatccaccacaaacctcttcaaaccgccaatacctttctccttttaaatcacacaacatt 39300499  T
Q  513 tccatgcacacatacaaaaaacatcacaagtacttcaacaaagttcaagcatcttaaactaccnnnnnnnnnnnnncaatcaaaagcaaaaccgtacgta 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||    
T  39300498 tccatgcacacatacaaaaaacatcacaagtacttcaacaaagttcaagcatcttaaactacaaaaaaaaaaaaaacaatcaaaagcaaaaccgtacgta 39300399  T
Q  613 acacccttttgttcttgttcnnnnnnnaaacacacaaaatggcatctgaacaattgtctcgcagagaaaacaccacaaacgagagagatattcatgttga 712  Q
    |||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300398 acacccttttgttcttgtt------aaacacacacaaaatggcatctgaacaattgtctcgcagagaaaacaccacaaacgagagagatattcatgttga 39300305  T

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