View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17154_low_20 (Length: 242)
Name: NF17154_low_20
Description: NF17154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17154_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 7300448 - 7300210
Alignment:
| Q |
1 |
actataattatctgtcttaatgactgtgatttgctacatttactgcaagtcagtgattatgatcaataatcagtaattaattaaagccataaagcaccag |
100 |
Q |
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| T |
7300448 |
actacaattatctgtcttaatgactgtgatttgctacatttactgcaagtcagtgattatgatcaataatcagtaattaattaaagccataaagcaccag |
7300349 |
T |
|
| Q |
101 |
catctttgagaagaggaacaagagaaccattaatatgaaaagccaaaaccctatccatagaaccaactaatttgccaccaatgaaaacaactggaagtga |
200 |
Q |
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| T |
7300348 |
catctttgagaagaggaacaagagaaccattaatatgaaaagccaaaactctatccatagaaccaactaatttgccaccaatgaaaacaaccggaagtga |
7300249 |
T |
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| Q |
201 |
tgttgaatttccaagtaacctcatcaatgctcttttcat |
239 |
Q |
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| T |
7300248 |
tgttgaatttccaagtaacctcatcaatactcttttcat |
7300210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 7333261 - 7333465
Alignment:
| Q |
33 |
gctacatttactgcaagtcagtgattatgatcaataatcagtaattaattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccatta |
132 |
Q |
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| T |
7333261 |
gctacatttactgcaagtaagtgcttatgatcactaatcat--attaattaaagccataaagcaccagcatctttgagaagtggaacaagagaaccatta |
7333358 |
T |
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| Q |
133 |
atatgaaaagccaaaaccctatccatagaaccaactaatttgccaccaatgaaaacaactggaagtgatgttgaatttccaagtaacctcatcaatgctc |
232 |
Q |
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| T |
7333359 |
atatgaaaagccaaaactctatccatagaaccaactaatttgccaccaatgaaaacaactggaagtgatgttgaatttccaagtaacctcatcaatgctc |
7333458 |
T |
|
| Q |
233 |
ttttcat |
239 |
Q |
| |
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||||||| |
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| T |
7333459 |
ttttcat |
7333465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 7340093 - 7340254
Alignment:
| Q |
78 |
taattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccattaatatgaaaagccaaaaccctatccatagaaccaactaatttgcca |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
7340093 |
taattaaagccataaagcaccagcatctttgagaagaggaataagtgaactattgatatgaaaagccaaaactctatccatagaaccaactaatttccca |
7340192 |
T |
|
| Q |
178 |
ccaatgaaaacaactggaagtgatgttgaatttccaagtaacctcatcaatgctcttttcat |
239 |
Q |
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| T |
7340193 |
ccaatgaaaacaactggaagtgatgttgaatttccaagtaacctcatcaatgctcttttcat |
7340254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 7376227 - 7376326
Alignment:
| Q |
50 |
tcagtgattatgatcaataatcagtaattaattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccattaatatgaaaagccaaaac |
149 |
Q |
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| T |
7376227 |
tcagtgcttatgatcagtaatgagtaattaattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccgttaatatgaaaagccaaaac |
7376326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 8909158 - 8909045
Alignment:
| Q |
83 |
aaagccataaagcaccagcatctttgagaagaggaacaagagaaccattaatatgaaaagccaaaaccctatccatagaaccaactaatttgccaccaat |
182 |
Q |
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||||||| | ||||||||| | |||||||||||||||||||||||||||||||||| |||||| || |||||||||| ||||| | ||| |||||||| |
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| T |
8909158 |
aaagccaaagagcaccagcttgtttgagaagaggaacaagagaaccattaatatgacaagccatgactctatccatagtaccaataagtttaccaccaat |
8909059 |
T |
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| Q |
183 |
gaaaacaactggaa |
196 |
Q |
| |
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||||||||| |||| |
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| T |
8909058 |
gaaaacaacaggaa |
8909045 |
T |
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