View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17155_low_1 (Length: 656)
Name: NF17155_low_1
Description: NF17155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17155_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 19 - 644
Target Start/End: Original strand, 40221041 - 40221666
Alignment:
| Q |
19 |
aaggcaatgctagaagccttcctttttgcgcacgtggtggaagatgctttgtgggttttctggatggaacattccagggcaagaagactccagtaccacc |
118 |
Q |
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| T |
40221041 |
aaggcaatgctagaagccttcctttttgcgcacgtggtggaagatgctttgtgggttttctggaaggaacattccagggcaagaagactccagtaccacc |
40221140 |
T |
|
| Q |
119 |
cccagccagtttgcggggattcactgccataggacgcataggtgtcagcatcatcatcgggccaggaagcattccccatttgggcatcatcatgtccata |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40221141 |
cccagccagtttgcggggattcactgccataggacgcataggtgtcagcatcatcatcgggccgggaagcattccccatttgggcatcatcatgtccata |
40221240 |
T |
|
| Q |
219 |
ccatcatagccacaacttaaagctccatttggcaaagcatacgggttagcgatggcaggttgccacatagtcattgcgcttgtcatggtaggagttggtg |
318 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221241 |
ccatcatagccacagcttaaagctccatttggcaaagcatacgggttagcgatggcaggttgccacatagtcattgcgcttgtcatggtaggagttggtg |
40221340 |
T |
|
| Q |
319 |
attgacattgattggagtctggcctcactctgaagaaggtgatgcttacccttctgttaggagatggacacatgacatgccttgccatgtcagcactgtt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221341 |
attgacattgattggagtctggcctcactctgaagaaggtgatgcttacccttctgttaggagatggacacatgacatgccttgccatgtcagcactgtt |
40221440 |
T |
|
| Q |
419 |
tcctctcatcaccagaagagacctgtaaaatcaagtggttatttatcagttagtactgtacaatgactgtctcaatttcctcgcacgagatattcnnnnn |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40221441 |
tcctctcatcaccagaagagacctgtaaaatcaagtggttatttatcagttagtactgtacaatgattgtctcaatttcctcgcacgagatattcaaaaa |
40221540 |
T |
|
| Q |
519 |
nntatctcagcaggtaactatacattcagcagcaatgattaacttgatgcttgagctgagaacattaacaaggctattgattattaaactaggtgctatt |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40221541 |
aatatctcagcaggtaactatacattcagcagcaatgattaacttgatgcttgagctgagaacattaacaaggctattgataattaaactaggtgctatt |
40221640 |
T |
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| Q |
619 |
tcaactacaatctagcaattgatatt |
644 |
Q |
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|||||||||||||||||||||||||| |
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| T |
40221641 |
tcaactacaatctagcaattgatatt |
40221666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 342 - 443
Target Start/End: Original strand, 37507910 - 37508011
Alignment:
| Q |
342 |
ctcactctgaagaaggtgatgcttacccttctgttaggagatggacacatgacatgccttgccatgtcagcactgtttcctctcatcaccagaagagacc |
441 |
Q |
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|||||||| |||||||||||||| ||||| |||||| ||||||| ||| ||||| |||||||||||||||||||||||| ||||||| | |||||||| |
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| T |
37507910 |
ctcactctaaagaaggtgatgctcaccctcttgttagtggatggacgcatcacatggcttgccatgtcagcactgtttcctttcatcactaaaagagacc |
37508009 |
T |
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| Q |
442 |
tg |
443 |
Q |
| |
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|| |
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| T |
37508010 |
tg |
37508011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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