View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17155_low_11 (Length: 228)
Name: NF17155_low_11
Description: NF17155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17155_low_11 |
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| [»] scaffold0608 (3 HSPs) |
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Alignment Details
Target: scaffold0608 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 6556 - 6434
Alignment:
| Q |
102 |
aaagggcaagctattataatacatgttcgcatatccgtgttcataaaaaatatatacccgaacgtattgttagcatgtatttttacctgtgcatttctac |
201 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| | |||||||||||||| |
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| T |
6556 |
aaagggcaagctattataa-acatgttcgcatatccgtgttcataaaaaatatatatctgaacttattgttagcatgtattttcatctgtgcatttctac |
6458 |
T |
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| Q |
202 |
aggaaagatgaacgtttaaagttg |
225 |
Q |
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| T |
6457 |
aggaaagatgaacgtttaaagttg |
6434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 6824 - 6738
Alignment:
| Q |
7 |
gttacacacattttcttttagtcagtttgtgnnnnnnnngttttgctttgtccttttccatttgaacaaaaaatatcaattagttaa |
93 |
Q |
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| T |
6824 |
gttacacacattttcttttagtcagtttgtgaaaaaaaagttttgctttgtccttttccatttgaacaaaaaatatcaattagttaa |
6738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 4386 - 4426
Alignment:
| Q |
53 |
tttgtccttttccatttgaacaaaaaatatcaattagttaa |
93 |
Q |
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| T |
4386 |
tttgtctttttctatttgaacaaagaatatcaattagttaa |
4426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 11111119 - 11110997
Alignment:
| Q |
102 |
aaagggcaagctattataatacatgttcgcatatccgtgttcataaaaaatatatacccgaacgtattgttagcatgtatttttacctgtgcatttctac |
201 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| | |||||||||||||| |
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| T |
11111119 |
aaagggcaagctattataa-acatgttcgcatatccgtgttcataaaaaatatatatctgaacttattgttagcatgtattttcatctgtgcatttctac |
11111021 |
T |
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| Q |
202 |
aggaaagatgaacgtttaaagttg |
225 |
Q |
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| T |
11111020 |
aggaaagatgaacgtttaaagttg |
11110997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 11111387 - 11111301
Alignment:
| Q |
7 |
gttacacacattttcttttagtcagtttgtgnnnnnnnngttttgctttgtccttttccatttgaacaaaaaatatcaattagttaa |
93 |
Q |
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| T |
11111387 |
gttacacacattttcttttagtcagtttgtgaaaaaaaagttttgctttgtccttttccatttgaacaaaaaatatcaattagttaa |
11111301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 11108949 - 11108989
Alignment:
| Q |
53 |
tttgtccttttccatttgaacaaaaaatatcaattagttaa |
93 |
Q |
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|||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
11108949 |
tttgtctttttctatttgaacaaagaatatcaattagttaa |
11108989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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