View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17155_low_2 (Length: 585)
Name: NF17155_low_2
Description: NF17155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17155_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 12 - 550
Target Start/End: Complemental strand, 6545626 - 6545088
Alignment:
| Q |
12 |
atcataacaaaagttaccaacatttatataaactgtttcatcaaagttttatattcaaaatttatctcaaccatgaagtttcaaaccaatgagattctca |
111 |
Q |
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| T |
6545626 |
atcataacaaaagttaccaacatttatataaactgtttcatcaaagttttatattcaaaatttatctcaaccatgaagtttcaaaccaatgagattctca |
6545527 |
T |
|
| Q |
112 |
atgggaagtacacaacaagaaaaacaaccaaaagtgtttttcttgtacctttcactcttcttctcatcatgtttcctcttattctcatgagaaacacaga |
211 |
Q |
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| T |
6545526 |
atgggaagtacacaacaagaaaaacaaccaaaagtgtttttcttgtaccattcactcttcttctcatcatgtttcctcttattctcatgagaaacacaga |
6545427 |
T |
|
| Q |
212 |
tgaaccatcaccaaacatgtcttctgtcaaacacatgaacaacaaaacacatacaaaaggatgtgacatcttttcaggtagttggattcctcattctgaa |
311 |
Q |
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||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6545426 |
tgaaccatctccaaacatgtcttctgtccaacacatgaataacaaaacacatacaaaaggatgtgacatcttttcaggtagttggattcctcattctgaa |
6545327 |
T |
|
| Q |
312 |
ggaccttactataacaatgaaacatgcaaatggatgatagatgaacaaaactgcatgaagtttggtaggccggacgatgagtatcttcattggagatgga |
411 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6545326 |
ggaccttattacaacaatgaaacatgcaaatggatgatagatgaacaaaactgcatgaagtttggtaggccggacgatgagtatcttcattggagatgga |
6545227 |
T |
|
| Q |
412 |
aaccaaacgattgcgagcttccattgtttaatgcaactcaattcttagagattgttagaggaaagaaaatggttcttgttggagattctgttgggagaaa |
511 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6545226 |
aaccaaacgaatgcgagcttccgttgtttaatgcaactcaattcttagagattgttagaggaaagaaaatggtttttgttggagattctgttgggagaaa |
6545127 |
T |
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| Q |
512 |
tcagttgcaatctttgttgtgcctcctaagtcatgtaag |
550 |
Q |
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| T |
6545126 |
tcagttgcaatctttgttgtgcctcctaagtcaagtaag |
6545088 |
T |
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