View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17155_low_3 (Length: 506)

Name: NF17155_low_3
Description: NF17155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17155_low_3
NF17155_low_3
[»] chr6 (8 HSPs)
chr6 (1-179)||(17171570-17171746)
chr6 (184-300)||(30045449-30045565)
chr6 (325-476)||(17171406-17171547)
chr6 (184-286)||(32729554-32729656)
chr6 (184-285)||(1701897-1701998)
chr6 (183-277)||(1702184-1702278)
chr6 (241-300)||(4140135-4140194)
chr6 (184-221)||(35033362-35033399)
[»] chr8 (10 HSPs)
chr8 (184-300)||(34373598-34373714)
chr8 (187-286)||(34373908-34374007)
chr8 (187-287)||(21008434-21008534)
chr8 (184-300)||(21397240-21397356)
chr8 (184-300)||(21791733-21791849)
chr8 (188-274)||(15937837-15937923)
chr8 (184-268)||(34074294-34074378)
chr8 (184-279)||(24196134-24196229)
chr8 (184-221)||(22576689-22576726)
chr8 (235-300)||(33446027-33446092)
[»] chr2 (17 HSPs)
chr2 (184-300)||(26533281-26533397)
chr2 (186-300)||(26533579-26533694)
chr2 (184-275)||(38144017-38144108)
chr2 (194-300)||(31074227-31074333)
chr2 (184-300)||(21089078-21089194)
chr2 (184-300)||(44279304-44279420)
chr2 (235-300)||(8596465-8596530)
chr2 (226-286)||(28163241-28163301)
chr2 (245-300)||(14913566-14913621)
chr2 (184-221)||(27187497-27187534)
chr2 (184-221)||(27837311-27837348)
chr2 (184-266)||(27187228-27187310)
chr2 (184-266)||(27836770-27836852)
chr2 (184-266)||(27837042-27837124)
chr2 (235-300)||(44279058-44279124)
chr2 (184-220)||(27187002-27187038)
chr2 (184-220)||(27836544-27836580)
[»] scaffold0007 (1 HSPs)
scaffold0007 (184-300)||(262123-262239)
[»] chr5 (8 HSPs)
chr5 (184-300)||(36975929-36976045)
chr5 (184-289)||(36975240-36975345)
chr5 (184-300)||(10567342-10567458)
chr5 (187-300)||(15173457-15173570)
chr5 (187-300)||(22586967-22587080)
chr5 (184-273)||(16253757-16253846)
chr5 (208-300)||(39569918-39570010)
chr5 (184-272)||(22599091-22599179)
[»] chr1 (11 HSPs)
chr1 (184-300)||(32024953-32025069)
chr1 (184-300)||(32025249-32025365)
chr1 (184-300)||(32025545-32025661)
chr1 (184-286)||(31412408-31412510)
chr1 (184-277)||(9448648-9448741)
chr1 (184-300)||(4119118-4119234)
chr1 (187-294)||(4662937-4663045)
chr1 (184-289)||(51865811-51865915)
chr1 (235-299)||(34228434-34228498)
chr1 (235-289)||(34228200-34228254)
chr1 (184-268)||(50013661-50013745)
[»] scaffold0251 (1 HSPs)
scaffold0251 (184-289)||(12603-12708)
[»] chr7 (14 HSPs)
chr7 (184-300)||(8356212-8356328)
chr7 (184-300)||(23071747-23071863)
chr7 (184-284)||(3958364-3958464)
chr7 (184-273)||(17944568-17944657)
chr7 (184-300)||(13789498-13789614)
chr7 (185-300)||(37223838-37223953)
chr7 (187-277)||(25193994-25194084)
chr7 (184-289)||(23072053-23072158)
chr7 (184-300)||(3958054-3958169)
chr7 (235-300)||(25194476-25194541)
chr7 (190-282)||(2196756-2196848)
chr7 (184-251)||(23072349-23072416)
chr7 (248-284)||(7406897-7406933)
chr7 (241-300)||(37223607-37223664)
[»] chr4 (8 HSPs)
chr4 (184-286)||(19987942-19988044)
chr4 (199-300)||(7833756-7833857)
chr4 (184-300)||(19987648-19987764)
chr4 (184-289)||(8107426-8107531)
chr4 (184-273)||(38978716-38978805)
chr4 (184-300)||(11028758-11028873)
chr4 (241-299)||(18936184-18936242)
chr4 (188-300)||(45015671-45015783)
[»] chr3 (4 HSPs)
chr3 (184-300)||(3870770-3870886)
chr3 (235-300)||(7407878-7407943)
chr3 (184-265)||(19997100-19997181)
chr3 (184-300)||(2706199-2706315)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 17171746 - 17171570
Alignment:
Q  1 aactcaatgccaaaacctcctgatttgaaccatccaaatgcgaaaaagaaggtggcaaccttcgtattgaatgcaaccaaccccgttgtaaaatcgtatg 100  Q
    ||||||||||||||||||| | |||| |||||||||||||||| |||||||| || |||||||||||| ||||||||| ||| || ||||| || |||||    
T  17171746 aactcaatgccaaaacctcttaatttaaaccatccaaatgcgacaaagaaggcggtaaccttcgtattaaatgcaacctacctcgctgtaagatggtatg 17171647  T
Q  101 ctcagaagtatatcctcgtaatcagacgtcattttcttcatctctctatgcaatgcatcaataatataattgagaatct 179  Q
    ||||||||  ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  17171646 ctcagaag--tatcctcataatcagacctcattttcttcatctctctacgcaatgcatcaataatttaattgagaatct 17171570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 30045449 - 30045565
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  30045449 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 30045548  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| || |||||||    
T  30045549 tgggcttaagtcctaac 30045565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 476
Target Start/End: Complemental strand, 17171547 - 17171406
Alignment:
Q  325 tggatgtgctggagccaatgttttcccctcaatccaactacacacaatagatagagatttcactcaacaaaccatcttctccggtccaaccggatcagtt 424  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||||      |||   || |||| ||||||||||| ||||||||||||||| ||||||||    
T  17171547 tggatctgctggagccaatgtcttcccctcaatcccactacaca------ata---atctcacccaacaaaccatattctccggtccaaccagatcagtt 17171457  T
Q  425 aatagtagcactcttttttgaaccacttaccgacttgggcatcgaagcacgt 476  Q
     || |||||||||| |||||||||||| |||||||| ||| | |||||||||    
T  17171456 -atggtagcactctcttttgaaccactgaccgacttaggcgttgaagcacgt 17171406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 32729554 - 32729656
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||| |||||||||||||| ||| ||||||||||  |  ||||||| ||| ||||||||||||| ||||||||||||||| ||||||||| |||||    
T  32729554 taggagtctcacatcgagtagatcaaactgcttgatgtgatacttaagtcatgaagttctcccacctattggactagtcttttgagttgggctctcctca 32729653  T
Q  284 tgg 286  Q
    |||    
T  32729654 tgg 32729656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 285
Target Start/End: Complemental strand, 1701998 - 1701897
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||| |||||||||||||| ||| | |||||||| ||  ||||| |  ||||||||||||| || |||||||||||||| |||||| ||| |||||    
T  1701998 taggagtctcacatcgagtagatcaaaatacttgatgtggtacttaagccaagaggttctcccacttattggactagtcttttaggttggcctctcctca 1701899  T
Q  284 tg 285  Q
    ||    
T  1701898 tg 1701897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 1702278 - 1702184
Alignment:
Q  183 ataggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctc 277  Q
    |||| ||||||||||||||||||| ||| || ||||||| ||  ||||| | ||||||||||| | ||| |||| | ||||||||||||||||||    
T  1702278 atagaagtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcctatctattggattggtcttttgggttgggctc 1702184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 4140135 - 4140194
Alignment:
Q  241 tctcccacctaatggactagtcttttgggttgggctcacctcatgggctaaaatcctaac 300  Q
    |||||||| ||||| |||||||||||||||||| ||| | ||||||||| ||||||||||    
T  4140135 tctcccacgtaatgaactagtcttttgggttggactctcttcatgggcttaaatcctaac 4140194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 35033362 - 35033399
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgt 221  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  35033362 taggagtctcacattgagtagattaaagtgcttgatgt 35033399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 34373714 - 34373598
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    ||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  34373714 taggactctcacatcgagtagattaaagtgcttgatgtagtacttaagtcgtgaggttctcccacctattggactagtcttttggattgggctctcctca 34373615  T
Q  284 tgggctaaaatcctaac 300  Q
    || ||| ||||||||||    
T  34373614 tgagcttaaatcctaac 34373598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 34374007 - 34373908
Alignment:
Q  187 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgg 286  Q
    ||||| || |||||||||||||||||||||||||| ||  ||||| ||||||||||||| || || ||||||||||||||| |||||||||  |||||||    
T  34374007 gagtctcatatcgagtagattaaagtgcttgatgtggtacttaagccgtgaggttctcctacatattggactagtcttttgcgttgggctcttctcatgg 34373908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 21008534 - 21008434
Alignment:
Q  187 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgg 286  Q
    ||||||||||||||||| || |||||| ||| ||| ||  ||||||   |||| || ||||||||||||||| |||||||||||||||||| ||||||||    
T  21008534 gagtcccacatcgagtacataaaagtgtttgttgtggtacttaagttacgaggctcccccacctaatggacttgtcttttgggttgggctctcctcatgg 21008435  T
Q  287 g 287  Q
    |    
T  21008434 g 21008434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 21397240 - 21397356
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||| |||||||||| |||||| ||||||| || |||||  |  | || ||||||||||||||||||||||||||   ||||||||  || |    
T  21397240 taggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactagtcttttcaattgggctctgctaa 21397339  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| ||||||||||    
T  21397340 tgggcttaaatcctaac 21397356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 21791733 - 21791849
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||| |||||||||| |||||| ||||||| || |||||  |  | || ||||||||||||||||||||||||||   ||||||||  || |    
T  21791733 taggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactagtcttttcaattgggctctgctaa 21791832  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| ||||||||||    
T  21791833 tgggcttaaatcctaac 21791849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 15937923 - 15937837
Alignment:
Q  188 agtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttggg 274  Q
    |||||||||||| ||| || ||| |||||||||| ||  ||||| | ||||  ||||||||||||||||||||||||||||||||||    
T  15937923 agtcccacatcgggtatataaaattgcttgatgtggtacttaagccatgagtctctcccacctaatggactagtcttttgggttggg 15937837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 34074294 - 34074378
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgg 268  Q
    ||||| || |||||||||||||| ||| | ||||||||  |  ||||| | ||||| ||||||||||| ||||||||||||||||    
T  34074294 taggattctcacatcgagtagatcaaaatacttgatgtgatacttaaggcatgaggctctcccacctattggactagtcttttgg 34074378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 24196229 - 24196134
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcac 279  Q
    ||||||| ||||||||| ||||| |||||  | || || ||| |||||   ||||| || ||||||||||||| |||| |||||||||||||||||    
T  24196229 taggagttccacatcgattagataaaagttatcgacgtggtgcttaagctatgaggctcccccacctaatggattagtattttgggttgggctcac 24196134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 22576726 - 22576689
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgt 221  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  22576726 taggagtcccacatcgagtagataaaaatgcttgatgt 22576689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 33446027 - 33446092
Alignment:
Q  235 tgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggctaaaatcctaac 300  Q
    ||||||||| |||| ||||| ||||||||||| |||||||||| || |||| ||| ||||| ||||    
T  33446027 tgaggttcttccacttaatgaactagtcttttaggttgggctctccgcatgagcttaaatcttaac 33446092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 26533281 - 26533397
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    ||||||||||||||||||||||| |||||||||||||| ||  ||||  | ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26533281 taggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaccatgaggttctcccacctaatggactagtcttttgggttgggctctcctca 26533380  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| || |||||||    
T  26533381 tgggcttaagtcctaac 26533397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 26533579 - 26533694
Alignment:
Q  186 ggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcg-tgaggttctcccacctaatggactagtcttttgggttgggctcacctcat 284  Q
    ||||||||||||||||||||| |||||||||||||| ||  ||||  |  ||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  26533579 ggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaaccatgaggttctcccacctattggactagtcttttgggttgggctctcctcat 26533678  T
Q  285 gggctaaaatcctaac 300  Q
    ||||| || |||||||    
T  26533679 gggcttaagtcctaac 26533694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 38144017 - 38144108
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggc 275  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| |||||||||||||    
T  38144017 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggc 38144108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 31074227 - 31074333
Alignment:
Q  194 acatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggctaaaa 293  Q
    ||||||||||||| |||||  ||||||| ||  ||||| | ||||||||||  | ||| ||||||||||||||||||||||||| ||||||||||| ||     
T  31074227 acatcgagtagatcaaagtatttgatgtggtacttaagccatgaggttctcatatctattggactagtcttttgggttgggctctcctcatgggcttaag 31074326  T
Q  294 tcctaac 300  Q
    |||||||    
T  31074327 tcctaac 31074333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 21089078 - 21089194
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||||||||||| || | |||| || |||| || |||||  | | ||| ||| | |||||||||| |||||||||||||||||||| | |||    
T  21089078 taggagtcccacatcgagtaaataagagtgttttatgtggtatttaaaccatcaggctctgcgacctaatggattagtcttttgggttgggctctcttca 21089177  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| ||||||||||    
T  21089178 tgggcttaaatcctaac 21089194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 44279304 - 44279420
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    ||||||||||||||| ||||||| |||||| ||||||  ||  ||||  | ||||||||||||||||| | ||||| ||||||||||||||||| |||||    
T  44279304 taggagtcccacatcaagtagatcaaagtgtttgatgcggtacttaaaccttgaggttctcccacctattagactaatcttttgggttgggctctcctca 44279403  T
Q  284 tgggctaaaatcctaac 300  Q
     | ||| || |||||||    
T  44279404 cgagcttaagtcctaac 44279420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 8596530 - 8596465
Alignment:
Q  235 tgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggctaaaatcctaac 300  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| |||| |||||| || |||||||    
T  8596530 tgaggttctcccacctattggactagttttttgggttgggctctcctcgtgggcttaagtcctaac 8596465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 28163241 - 28163301
Alignment:
Q  226 tttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgg 286  Q
    |||||| |||||||||||||||| |||||||||||| |||||||||| |||| || |||||    
T  28163241 tttaagccgtgaggttctcccacttaatggactagtattttgggttgagctctccacatgg 28163301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 14913621 - 14913566
Alignment:
Q  245 ccacctaatggactagtcttttgggttgggctcacctcatgggctaaaatcctaac 300  Q
    |||||||||||||||||||||| |||||||||| |||||| |||| || |||||||    
T  14913621 ccacctaatggactagtcttttcggttgggctcccctcataggcttaagtcctaac 14913566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 27187534 - 27187497
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgt 221  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  27187534 taggagtcccacatcgagtagatcaaagtgcttgatgt 27187497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 27837348 - 27837311
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgt 221  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  27837348 taggagtcccacatcgagtagatcaaagtgcttgatgt 27837311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 27187310 - 27187228
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtctttt 266  Q
    |||||||| |||||||||||||| ||| | ||||||||  |  ||||||| ||||||| || |||||| |||| |||||||||    
T  27187310 taggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattggagtagtctttt 27187228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 27836852 - 27836770
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtctttt 266  Q
    |||||||| |||||||||||||| ||| | ||||||||  |  ||||||| ||||||| || |||||| |||| |||||||||    
T  27836852 taggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattggagtagtctttt 27836770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 27837124 - 27837042
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtctttt 266  Q
    |||||||| |||||||||||||| ||| | ||||||||  |  ||||||| ||||||| || |||||| |||| |||||||||    
T  27837124 taggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattggagtagtctttt 27837042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 44279058 - 44279124
Alignment:
Q  235 tgaggttctcccacctaatggactagtc-ttttgggttgggctcacctcatgggctaaaatcctaac 300  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||| ||| | || |||||||    
T  44279058 tgaggttctcccacctattggagtagtctttttgggttgggctctcctcacgggtttaagtcctaac 44279124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 27187038 - 27187002
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatg 220  Q
    |||||||| |||||||||||||| |||||||||||||    
T  27187038 taggagtctcacatcgagtagatcaaagtgcttgatg 27187002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 27836580 - 27836544
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatg 220  Q
    |||||||| |||||||||||||| |||||||||||||    
T  27836580 taggagtctcacatcgagtagatcaaagtgcttgatg 27836544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 262123 - 262239
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  262123 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 262222  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| || |||||||    
T  262223 tgggcttaagtcctaac 262239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 36975929 - 36976045
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    ||||||||||||||||||||||| |||||| ||||||| || |||||||| | ||| ||||||||||  ||||||||||||||||||| ||||| |||||    
T  36975929 taggagtcccacatcgagtagatcaaagtgtttgatgtggtatttaagtcataaggctctcccacctgttggactagtcttttgggttaggctctcctca 36976028  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| ||||||||||    
T  36976029 tgggcttaaatcctaac 36976045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 36975240 - 36975345
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||| | ||| ||||||| ||| || |||||||||||||||||||||| | |||    
T  36975240 taggagtcccacatcgagtagattaaagtgtttgatgtagtatttaagtcataaggctctcccatctattgaactagtcttttgggttgggctctcttca 36975339  T
Q  284 tgggct 289  Q
    ||||||    
T  36975340 tgggct 36975345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 10567342 - 10567458
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||||| ||||| || ||||||||||||||  |  ||||| | ||||||||||||||||| || |||||||||||||||||||||| |||||    
T  10567342 taggagtcccacattgagtatatcaaagtgcttgatgtgatacttaaggcatgaggttctcccacctattgcactagtcttttgggttgggctctcctca 10567441  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| || |||||||    
T  10567442 tgggcttaagtcctaac 10567458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 15173570 - 15173457
Alignment:
Q  187 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgg 286  Q
    |||||||||| || |||| | |||||||||||||| ||  ||||  | ||||| ||||||||||  ||||||||||||||||||||||||| ||||||||    
T  15173570 gagtcccacaccgggtagctaaaagtgcttgatgtggtacttaacccatgaggctctcccaccttttggactagtcttttgggttgggctctcctcatgg 15173471  T
Q  287 gctaaaatcctaac 300  Q
    ||| || |||||||    
T  15173470 gcttaagtcctaac 15173457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 22587080 - 22586967
Alignment:
Q  187 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgg 286  Q
    |||||||||||||||||  | |||||| ||||||||||  ||||| | ||||| |||| |||||| ||||||||||||||||||| |||||  |||||||    
T  22587080 gagtcccacatcgagtaactaaaagtgtttgatgtagtacttaagccatgaggctctcacacctattggactagtcttttgggtttggctcttctcatgg 22586981  T
Q  287 gctaaaatcctaac 300  Q
    ||| || |||||||    
T  22586980 gcttaagtcctaac 22586967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 16253757 - 16253846
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgg 273  Q
    |||||||| |||||||||||||| ||| |||| | ||| ||  ||| |||  ||| |||||||| ||||||||||| |||||||||||||    
T  16253757 taggagtctcacatcgagtagataaaaatgctcggtgtggtacttaggtcacgagattctcccaactaatggactaatcttttgggttgg 16253846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 39570010 - 39569918
Alignment:
Q  208 aaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggctaaaatcctaac 300  Q
    |||||||||||||||||  ||||  | ||||||||| ||||||| ||||||||||| |||| |||  ||| |||||||| || || |||||||    
T  39570010 aaagtgcttgatgtagtacttaaaccttgaggttcttccacctattggactagtctcttggattgaactctcctcatggacttaagtcctaac 39569918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 22599179 - 22599091
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttg 272  Q
    |||||||||||||||| |||  | |||||| ||||| | ||  ||||||| ||||| |||| || ||| |||||||||||||| |||||    
T  22599179 taggagtcccacatcgggtaactaaaagtgtttgatatggtacttaagtcatgaggctctctcatctattggactagtcttttaggttg 22599091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 32024953 - 32025069
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  32024953 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 32025052  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| || |||||||    
T  32025053 tgggcttaagtcctaac 32025069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 32025249 - 32025365
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  32025249 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 32025348  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| || |||||||    
T  32025349 tgggcttaagtcctaac 32025365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 32025545 - 32025661
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  32025545 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 32025644  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| || |||||||    
T  32025645 tgggcttaagtcctaac 32025661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 31412510 - 31412408
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    ||||||||||||||||||||||| ||| |||||||||| ||  ||||| ||||||||||||||||||| |  |||||||||||||||||| ||| |||||    
T  31412510 taggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccgtgaggttctcccacctattcaactagtcttttgggttggactctcctca 31412411  T
Q  284 tgg 286  Q
    |||    
T  31412410 tgg 31412408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 9448741 - 9448648
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctc 277  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| |||||||||||||||    
T  9448741 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctc 9448648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 4119118 - 4119234
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    ||||||||||||||||||||||| |||||| | ||  | ||  ||||| | ||||| ||| ||||| |||||||||||||||||||| |||||| ||| |    
T  4119118 taggagtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcctta 4119217  T
Q  284 tgggctaaaatcctaac 300  Q
    || ||| || |||||||    
T  4119218 tgagcttaagtcctaac 4119234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 294
Target Start/End: Complemental strand, 4663045 - 4662937
Alignment:
Q  187 gagtcccacatcgagtagattaaagtgcttgatgtagt-gtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatg 285  Q
    ||||| |||||| |||||||||||||||||||||| ||  |||| ||| |||||||||||||| ||||| | | ||||| || ||||||||| ||| |||    
T  4663045 gagtctcacatcaagtagattaaagtgcttgatgtggtattttaggtcatgaggttctcccacttaatgaaatggtcttctgcgttgggctctccttatg 4662946  T
Q  286 ggctaaaat 294  Q
    |||| ||||    
T  4662945 ggcttaaat 4662937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 51865811 - 51865915
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||||| |||||||  | |||| ||||||| ||  ||||||| ||| ||||||||||||| | |||||||||||  ||||||| || |||||    
T  51865811 taggagtcccacatagagtagaacatagtgtttgatgtggtacttaagtcatgaagttctcccacctattagactagtctttcaggttggg-tctcctca 51865909  T
Q  284 tgggct 289  Q
    ||||||    
T  51865910 tgggct 51865915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 34228498 - 34228434
Alignment:
Q  235 tgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggctaaaatcctaa 299  Q
    ||||| |||||||| |||||||||||||||||||||||| ||| |||||||| || || ||||||    
T  34228498 tgaggctctcccacttaatggactagtcttttgggttggactctcctcatggacttaagtcctaa 34228434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 34228254 - 34228200
Alignment:
Q  235 tgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggct 289  Q
    ||||| ||||| |||||||||||| |||||||| ||||||||| |||| ||||||    
T  34228254 tgaggctctccgacctaatggactggtcttttgagttgggctctcctcgtgggct 34228200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 50013745 - 50013661
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgg 268  Q
    |||||||||||||| ||||| ||||||  | ||||||| || |||||||| ||| | |||| ||| ||||||||  |||||||||    
T  50013745 taggagtcccacattgagtaaattaaaaggtttgatgtggtatttaagtcatgatgctctctcacttaatggacgggtcttttgg 50013661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 12603 - 12708
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    ||||||||||||||||||||||| ||||||||||||||  |  ||||| | ||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  12603 taggagtcccacatcgagtagatcaaagtgcttgatgtgttacttaagccatgaggttcttccacctattggactagtcttttgggttgggctctcctca 12702  T
Q  284 tgggct 289  Q
    ||||||    
T  12703 tgggct 12708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 8356328 - 8356212
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | |||||||||||||||||  |||||||| ||||||||||||||| |||||    
T  8356328 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctataggactagttttttgggttgggctctcctca 8356229  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| || |||||||    
T  8356228 tgggcttaagtcctaac 8356212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 23071747 - 23071863
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||| |||||||||||| ||| || ||||||| ||  ||||  | ||| ||||||||||||| ||||||||||||||||||||||||| | |||    
T  23071747 taggagtccctcatcgagtagatcaaaatgtttgatgtggtacttaaaccatgaagttctcccacctattggactagtcttttgggttgggctctcatca 23071846  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| ||||||||||    
T  23071847 tgggcttaaatcctaac 23071863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 3958464 - 3958364
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||| |||||||||||||| ||||| |||||||| ||  ||||||| ||||||||||||| |||  ||||||||||||||| |||||||| |||||    
T  3958464 taggagtctcacatcgagtagatcaaagtacttgatgtggtacttaagtcatgaggttctcccatctataggactagtcttttggattgggctctcctca 3958365  T
Q  284 t 284  Q
    |    
T  3958364 t 3958364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 17944568 - 17944657
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgg 273  Q
    ||||||||||||||||||||||| |||||||| ||||| ||  ||||| | ||||| ||||||| |||||||||||||||||| ||||||    
T  17944568 taggagtcccacatcgagtagataaaagtgctcgatgtggtacttaagccatgaggctctcccatctaatggactagtctttttggttgg 17944657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 13789614 - 13789498
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||||||| |||  | |||||||||||||| ||  ||||| | || || ||||||||||| ||||||||| |||| |||||||||| ||||     
T  13789614 taggagtcccacatcgggtaactaaaagtgcttgatgtggtacttaagccatggggctctcccacctattggactagttttttaggttgggctctcctct 13789515  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| || |||||||    
T  13789514 tgggcttaagtcctaac 13789498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 37223838 - 37223953
Alignment:
Q  185 aggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcat 284  Q
    ||||||||||||| |||||||| ||||||||  |||  ||  ||||| | ||||  ||||||||||||||||||||||||  | ||||||||| ||| ||    
T  37223838 aggagtcccacattgagtagataaaagtgctcaatgaggtacttaagccatgagactctcccacctaatggactagtcttaggcgttgggctctccttat 37223937  T
Q  285 gggctaaaatcctaac 300  Q
    ||||| || |||||||    
T  37223938 gggcttaagtcctaac 37223953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 25193994 - 25194084
Alignment:
Q  187 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctc 277  Q
    ||||||||||||| ||| || ||| || ||||||| ||  ||||| | ||||| ||| |||||||||||| ||||||||||||||||||||    
T  25193994 gagtcccacatcgggtaaataaaaatgtttgatgtggtacttaagccatgaggctcttccacctaatggattagtcttttgggttgggctc 25194084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 23072053 - 23072158
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    ||||||||||||||||||||||| ||| ||||| ||||  |  ||||  | ||| ||||||||||||| |||||||  |||||||||| ||||| | |||    
T  23072053 taggagtcccacatcgagtagatcaaaatgcttaatgtgatacttaaaccatgaagttctcccacctattggactacacttttgggttaggctctcttca 23072152  T
Q  284 tgggct 289  Q
    ||||||    
T  23072153 tgggct 23072158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 3958169 - 3958054
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||||||| |||||||||| || || ||||||||  |  ||||||  |||||||||||||||||  |||||||||||||| |||| |||| | ||     
T  3958169 taggagtcccacgtcgagtagatcaa-gtacttgatgtgatacttaagttatgaggttctcccacctataggactagtcttttgagttgagctctcttcg 3958071  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| || |||||||    
T  3958070 tgggcttaagtcctaac 3958054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 25194476 - 25194541
Alignment:
Q  235 tgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggctaaaatcctaac 300  Q
    ||||| |||||| ||||||| |||||| ||||||||| | ||||||||||||| | ||||||||||    
T  25194476 tgaggctctcccccctaatgaactagtgttttgggttagactcacctcatgggtttaaatcctaac 25194541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 2196756 - 2196848
Alignment:
Q  190 tcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctc 282  Q
    ||||||||||||||||| |||  ||||||||| ||  ||||||| ||||  ||| ||||||||| |||||||| ||||| ||| |||| ||||    
T  2196756 tcccacatcgagtagataaaaaagcttgatgtggtacttaagtcatgagactcttccacctaatagactagtcatttggattgagctctcctc 2196848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 23072349 - 23072416
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta 251  Q
    ||||||||||||||||||||||| ||| |||||||||| ||  ||||  | ||| |||||||||||||    
T  23072349 taggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaaaccatgaagttctcccaccta 23072416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 7406933 - 7406897
Alignment:
Q  248 cctaatggactagtcttttgggttgggctcacctcat 284  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  7406933 cctaatggactagtcttttgggttgagctctcctcat 7406897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 37223607 - 37223664
Alignment:
Q  241 tctcccacctaatggactagtcttttgggttgggctcacctcatgggctaaaatcctaac 300  Q
    ||||||||||||||||||||  |||| |||||||||| ||||||| ||| || |||||||    
T  37223607 tctcccacctaatggactag--tttttggttgggctctcctcatgtgcttaagtcctaac 37223664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 19987942 - 19988044
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    ||||||||||||||||||||||| ||| |||||||||| ||  ||||| | ||||||||||||||||| |||||||||||| |||||||||||| |||||    
T  19987942 taggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccatgaggttctcccacctattggactagtcttctgggttgggctctcctca 19988041  T
Q  284 tgg 286  Q
    |||    
T  19988042 tgg 19988044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 7833857 - 7833756
Alignment:
Q  199 gagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggctaaaatccta 298  Q
    |||||||| |||||||||||||| ||  ||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||||||||| || |||||    
T  7833857 gagtagataaaagtgcttgatgtggtacttaagtcatgaggctctcccacctaatggactagtcttttgggttgggtttccctcatgggcttaagtccta 7833758  T
Q  299 ac 300  Q
    ||    
T  7833757 ac 7833756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 19987648 - 19987764
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    ||||||||||||||||||||||| ||| || ||||||| ||  ||||| | ||||||||||||||||| |||||||||||| |||||| ||||| |||||    
T  19987648 taggagtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcccacctattggactagtcttctgggttaggctctcctca 19987747  T
Q  284 tgggctaaaatcctaac 300  Q
    ||| || || |||||||    
T  19987748 tggacttaagtcctaac 19987764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 289
Target Start/End: Complemental strand, 8107531 - 8107426
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    ||||||||||||||||||||||| |||||||||||||| ||  |||||   ||||||||||||| | | || ||||| |||||| ||||||||| ||| |    
T  8107531 taggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaagctatgaggttctcccatccattgaactagccttttgagttgggctctcctta 8107432  T
Q  284 tgggct 289  Q
    ||||||    
T  8107431 tgggct 8107426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 38978716 - 38978805
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgg 273  Q
    |||||||||||||| |||||||| |||||| ||||||| ||  ||||  | ||||| ||| |||||||||||| ||||||||| ||||||    
T  38978716 taggagtcccacatggagtagataaaagtgtttgatgtggtacttaaaccatgaggctcttccacctaatggattagtctttttggttgg 38978805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 11028758 - 11028873
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||| ||||||||||| || |||||| |||||||  | |||||  | ||||| |||| |||||||||||||| | ||||||||||| |||  ||||    
T  11028758 taggagtctcacatcgagtaaataaaagtgtttgatgtgatatttaaaccatgaggatctctcacctaatggacta-ttttttgggttggtctcttctca 11028856  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| || |||||||    
T  11028857 tgggcttaagtcctaac 11028873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 18936184 - 18936242
Alignment:
Q  241 tctcccacctaatggactagtcttttgggttgggctcacctcatgggctaaaatcctaa 299  Q
    |||||||| |||| || |||||||||||||||||||| ||||||||||| || ||||||    
T  18936184 tctcccacttaatagaatagtcttttgggttgggctctcctcatgggcttaagtcctaa 18936242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 300
Target Start/End: Complemental strand, 45015783 - 45015671
Alignment:
Q  188 agtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatggg 287  Q
    ||||||||||||| || || |||||| ||  ||| || || || || ||||| ||||| | ||||||||||||| |||||||| || ||| | |||||||    
T  45015783 agtcccacatcgaatacataaaagtgtttactgtggtattcaaatcatgaggctctcctatctaatggactagttttttgggtcggactctcttcatggg 45015684  T
Q  288 ctaaaatcctaac 300  Q
    || || |||||||    
T  45015683 cttaagtcctaac 45015671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 3870886 - 3870770
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    |||||||| ||||||||||||||| || |||||||||| ||  |||||    |||| |||||||||   ||||||||||||||||||||||||| |||||    
T  3870886 taggagtctcacatcgagtagatttaaatgcttgatgtggtacttaagctacgaggctctcccaccatttggactagtcttttgggttgggctctcctca 3870787  T
Q  284 tgggctaaaatcctaac 300  Q
    |||||| || |||||||    
T  3870786 tgggcttaagtcctaac 3870770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 7407878 - 7407943
Alignment:
Q  235 tgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggctaaaatcctaac 300  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| || |||||||    
T  7407878 tgaggttctcccacctattggactagttttttgggttgggctctcctcatgggcttaagtcctaac 7407943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 19997181 - 19997100
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttt 265  Q
    ||||| || ||||||||||| || ||| |||||||||| ||  ||||||| | || |||||||||||| | |||||||||||    
T  19997181 taggaatctcacatcgagtatatcaaaatgcttgatgtggtacttaagtcctaagattctcccacctattagactagtcttt 19997100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 2706315 - 2706199
Alignment:
Q  184 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 283  Q
    ||||||||| |||| ||||||||  ||||||||||||| || ||||| |  | ||  ||| |||||||| | ||||||||||||| || || || |||||    
T  2706315 taggagtcctacattgagtagatacaagtgcttgatgtggtatttaaattatcagcatcttccacctaaagtactagtcttttggtttaggttctcctca 2706216  T
Q  284 tgggctaaaatcctaac 300  Q
    | |||| || |||||||    
T  2706215 tcggcttaagtcctaac 2706199  T

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