View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17155_low_6 (Length: 327)
Name: NF17155_low_6
Description: NF17155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17155_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 3675532 - 3675689
Alignment:
| Q |
12 |
cgaagaatatagatcacgaacgcatcacaaactgatgtggttataagttataacacttacgtgctgtcatttccgctccttccagaactatacactgctt |
111 |
Q |
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| T |
3675532 |
cgaagaatatagatcacgaacgcatcacaaactgatgtggttataagttataacacttacgtgctgtcatttccgctcattccagaactatacactgctt |
3675631 |
T |
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| Q |
112 |
cttcctttataattacaacacgaatcgattcgggaagatcatggtgaggtgtgttctt |
169 |
Q |
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| T |
3675632 |
cttcctttataattacaacacgaatcgattcgggaagatcatggtgagatgtgttctt |
3675689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 168 - 306
Target Start/End: Original strand, 3675878 - 3676020
Alignment:
| Q |
168 |
tttgatataagctttatgccaaaaagcatg----ctacaacagatagcagagtgaataaataacctcaaacacctatatagtccctttcccttattaata |
263 |
Q |
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| T |
3675878 |
tttgatataagctttatgccaaaaagcatgtatgctacaacagatagcagagtgaataaataacctcaaacacctatatagtccctttcccttattaata |
3675977 |
T |
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| Q |
264 |
agtagaatgtccaagtttgagtttaacttttaagatgagtcag |
306 |
Q |
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| T |
3675978 |
agtagaatgtccaagtttgagtttaacttttaagatgagtcag |
3676020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 3693799 - 3693890
Alignment:
| Q |
75 |
ctgtcatttccgctccttccagaactatacactgcttcttcctttataattacaacacgaatcgattcgggaagatcatggtgaggtgtgtt |
166 |
Q |
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| T |
3693799 |
ctgtgatttccgctcattcctgaaccatacactgcttcttcctttataattacaacacgtatcgattcgggaagatcatgatgaggtgtgtt |
3693890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 3686032 - 3686126
Alignment:
| Q |
75 |
ctgtcatttccgctccttccagaactatacactgcttcttcctttataattacaacacgaatcgattcgggaagatcatggtgaggtgtgttctt |
169 |
Q |
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|||| |||||||||| ||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||| |
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| T |
3686032 |
ctgtgatttccgctcattcatgaactatacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttctt |
3686126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 3695190 - 3695244
Alignment:
| Q |
251 |
tcccttattaataagtagaatgtccaagtttgagtttaacttttaagatgagtca |
305 |
Q |
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| T |
3695190 |
tcccttacttataattagaatgtccaagtttgagtttaacttttaaaatgagtca |
3695244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 3685958 - 3685998
Alignment:
| Q |
11 |
tcgaagaatatagatcacgaacgcatcacaaactgatgtgg |
51 |
Q |
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| T |
3685958 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtgg |
3685998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 3679253 - 3679323
Alignment:
| Q |
59 |
ttataacacttacgtgctgtcatttccgctccttccagaactatacactgcttcttcctttataattacaac |
130 |
Q |
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| T |
3679253 |
ttataacacatacacgctgtgatttccgctcattcctgaactatacactacttctt-cttaataattacaac |
3679323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 3703858 - 3703902
Alignment:
| Q |
251 |
tcccttattaataagtagaatgtccaagtttgagtttaactttta |
295 |
Q |
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| T |
3703858 |
tcccttacttataagtagaatgtcctagtttgaatttaactttta |
3703902 |
T |
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