View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17155_low_8 (Length: 249)

Name: NF17155_low_8
Description: NF17155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17155_low_8
NF17155_low_8
[»] scaffold0608 (1 HSPs)
scaffold0608 (1-242)||(6084-6325)
[»] chr1 (4 HSPs)
chr1 (1-242)||(11110647-11110888)
chr1 (170-242)||(16359596-16359668)
chr1 (80-230)||(24115173-24115322)
chr1 (80-112)||(4521532-4521564)
[»] chr5 (1 HSPs)
chr5 (80-233)||(16809593-16809745)
[»] chr6 (4 HSPs)
chr6 (80-194)||(6038987-6039100)
chr6 (80-112)||(3634429-3634461)
chr6 (80-142)||(22259189-22259251)
chr6 (80-112)||(6470118-6470150)
[»] chr4 (4 HSPs)
chr4 (80-217)||(24476324-24476462)
chr4 (79-114)||(14540695-14540730)
chr4 (80-112)||(12424884-12424916)
chr4 (81-113)||(22271962-22271994)
[»] chr8 (4 HSPs)
chr8 (155-233)||(13109875-13109953)
chr8 (82-140)||(28862416-28862474)
chr8 (152-233)||(18672509-18672590)
chr8 (80-112)||(5892718-5892750)
[»] chr3 (2 HSPs)
chr3 (80-142)||(17132794-17132856)
chr3 (81-113)||(13905995-13906027)
[»] chr2 (6 HSPs)
chr2 (80-132)||(19878982-19879034)
chr2 (83-114)||(30999851-30999882)
chr2 (80-142)||(13370466-13370528)
chr2 (80-114)||(24544009-24544043)
chr2 (83-112)||(23389239-23389268)
chr2 (80-112)||(31475894-31475926)
[»] scaffold0454 (1 HSPs)
scaffold0454 (80-112)||(13190-13222)
[»] scaffold0431 (1 HSPs)
scaffold0431 (80-112)||(5059-5091)
[»] scaffold0358 (1 HSPs)
scaffold0358 (80-112)||(15720-15752)
[»] scaffold0035 (1 HSPs)
scaffold0035 (80-108)||(25850-25878)
[»] chr7 (1 HSPs)
chr7 (80-112)||(22976630-22976662)


Alignment Details
Target: scaffold0608 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6325 - 6084
Alignment:
Q  1 aagttcaaaggttcagacatgtggaaaacatgcagaaattgtcaaagagatttagtttctagtcgttggtctttgcagttagtttttcataggaaaaacg 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6325 aagttcaaaggttcagacatatggaaaacatgcagaaattgtcaaagagatttagtttctagtcgttggtctatgcagttagtttttcataggaaaaacg 6226  T
Q  101 ggtcacaaatcactattacagaattctaaaactcaaagtacctggtgtagtgagaaaatagtcataaaatgtatgtaaagatttgatgaaccatttacat 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6225 ggtcacaaatcactattacagaattctaaaactcaaagtacccggtgtagagagaaaatagtcataaaatgtatgtaaagatttgatgaatcatttacat 6126  T
Q  201 ttcaatgcaatgcaattattgtttctttaagttcctatgctt 242  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  6125 ttcaatgcaatgcaattactgtttctttaagttcctttgctt 6084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 11110888 - 11110647
Alignment:
Q  1 aagttcaaaggttcagacatgtggaaaacatgcagaaattgtcaaagagatttagtttctagtcgttggtctttgcagttagtttttcataggaaaaacg 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11110888 aagttcaaaggttcagacatatggaaaacatgcagaaattgtcaaagagatttagtttctagtcgttggtctatgcagttagtttttcataggaaaaacg 11110789  T
Q  101 ggtcacaaatcactattacagaattctaaaactcaaagtacctggtgtagtgagaaaatagtcataaaatgtatgtaaagatttgatgaaccatttacat 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11110788 ggtcacaaatcactattacagaattctaaaactcaaagtacccggtgtagagagaaaatagtcataaaatgtatgtaaagatttgatgaatcatttacat 11110689  T
Q  201 ttcaatgcaatgcaattattgtttctttaagttcctatgctt 242  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  11110688 ttcaatgcaatgcaattactgtttctttaagttcctttgctt 11110647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 16359596 - 16359668
Alignment:
Q  170 tgtatgtaaagatttgatgaaccatttacatttcaatgcaatgcaattattgtttctttaagttcctatgctt 242  Q
    |||||||||||||||| ||||||||||  |||||||||||||| ||||| | || |||||||||||| |||||    
T  16359596 tgtatgtaaagatttgttgaaccattttaatttcaatgcaatgtaattacttttgctttaagttcctttgctt 16359668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 24115173 - 24115322
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatcactattacagaattctaaaactcaaagtacctggtgtagtgagaaaatagtcataaaatgtatgtaaa 179  Q
    |||||||||||| ||||||| | |||||||||| ||| | | | |||||| || |||| ||||    |||| ||||||| ||||| ||||||||| ||||    
T  24115173 tagtttttcataagaaaaacagatcacaaatcattatcaaa-agttctaatacacaaaatacccaacgtagagagaaaagagtcacaaaatgtatataaa 24115271  T
Q  180 gatttgatgaaccatttacatttcaatgcaatgcaattattgtttctttaa 230  Q
     ||||| |||||||| |  ||||||||||||| |||||| | |||||||||    
T  24115272 tatttgttgaaccatctttatttcaatgcaatacaattactttttctttaa 24115322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 4521532 - 4521564
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatca 112  Q
    ||||||||||||| |||||||||||||||||||    
T  4521532 tagtttttcatagaaaaaacgggtcacaaatca 4521564  T

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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 16809745 - 16809593
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatcactattacagaattctaaaactcaaagtacctggtgtagtgagaaaatagtcataaaatgtatgtaaa 179  Q
    ||||| || |||||||||||||| ||| ||| ||| ||||||| ||||||||||||||||||     |||| ||||||| ||||||| ||| || |||||    
T  16809745 tagttctttataggaaaaacggggcacgaattactcttacaga-ttctaaaactcaaagtacacatcgtagagagaaaagagtcatagaatttaggtaaa 16809647  T
Q  180 gatttgatgaaccatttacatttcaatgcaatgcaattattgtttctttaagtt 233  Q
    |||||||||||||| ||||||||||||||||| |||||  | ||||||||||||    
T  16809646 gatttgatgaaccacttacatttcaatgcaatacaatttatctttctttaagtt 16809593  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 6039100 - 6038987
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatcactattacagaattctaaaactcaaagtacctggtgtagtgagaaaatagtcataaaatgtatgtaaa 179  Q
    ||||||||||||| ||||||  |||||||||| |  ||||||||||| || ||||||||||||  | |||| ||||||| ||||| | ||||||||||||    
T  6039100 tagtttttcatag-aaaaacaagtcacaaatctcatttacagaattcaaacactcaaagtacccagcgtagagagaaaagagtcacataatgtatgtaaa 6039002  T
Q  180 gatttgatgaaccat 194  Q
    |||||| ||||||||    
T  6039001 gatttgttgaaccat 6038987  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 3634461 - 3634429
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatca 112  Q
    |||||||||||||||||||||||||||||||||    
T  3634461 tagtttttcataggaaaaacgggtcacaaatca 3634429  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 22259189 - 22259251
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatcactattacagaattctaaaactcaaagtacc 142  Q
    |||||||||||| |||||| || ||||||||| |  ||||||||||| || ||||||||||||    
T  22259189 tagtttttcatatgaaaaatggatcacaaatctcagttacagaattcaaacactcaaagtacc 22259251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 6470118 - 6470150
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatca 112  Q
    ||||||||||||||||||| |||||||||||||    
T  6470118 tagtttttcataggaaaaaagggtcacaaatca 6470150  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 24476462 - 24476324
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatcactattacagaattctaaaactcaaagtacctggtgtagtgagaaaatagtcataaaatgtatgtaaa 179  Q
    |||| ||||||||||||| ||| ||||||||| |  ||||||||||| || |||||||||||   |  ||| ||||||||||||||| ||||| |||||     
T  24476462 tagtgtttcataggaaaagcggatcacaaatctcatttacagaattcaaacactcaaagtactaagcctagagagaaaatagtcatagaatgtttgtaat 24476363  T
Q  180 gatttgatgaacca-tttacatttcaatgcaatgcaatt 217  Q
    |||||| | |||||  ||  |||||||||||||||||||    
T  24476362 gatttgctaaaccacattttatttcaatgcaatgcaatt 24476324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 14540730 - 14540695
Alignment:
Q  79 ttagtttttcataggaaaaacgggtcacaaatcact 114  Q
    |||||||||||||||||||| |||||||||||||||    
T  14540730 ttagtttttcataggaaaaatgggtcacaaatcact 14540695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 12424916 - 12424884
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatca 112  Q
    ||||||||||||||||||||||||| |||||||    
T  12424916 tagtttttcataggaaaaacgggtcgcaaatca 12424884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 22271994 - 22271962
Alignment:
Q  81 agtttttcataggaaaaacgggtcacaaatcac 113  Q
    |||||||||||||||||||||||||||| ||||    
T  22271994 agtttttcataggaaaaacgggtcacaattcac 22271962  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 13109953 - 13109875
Alignment:
Q  155 aaaatagtcataaaatgtatgtaaagatttgatgaaccatttacatttcaatgcaatgcaattattgtttctttaagtt 233  Q
    |||| ||||| ||||| ||||||||||||||||||||||| |  | |||||||||||||||||  | ||||||||||||    
T  13109953 aaaagagtcacaaaatatatgtaaagatttgatgaaccatctttaattcaatgcaatgcaatttatttttctttaagtt 13109875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 28862416 - 28862474
Alignment:
Q  82 gtttttcataggaaaaacgggtcacaaatcactattacagaattctaaaactcaaagta 140  Q
    |||||||||| |||||| ||||||||||||| ||||| |||||||||  ||||||||||    
T  28862416 gtttttcataagaaaaatgggtcacaaatcattattatagaattctagcactcaaagta 28862474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 18672509 - 18672590
Alignment:
Q  152 gagaaaatagtcataaaatgtatgtaaagatttgatgaaccatttacatttcaatgcaatgcaattattgtttctttaagtt 233  Q
    ||||||| ||||| ||| ||||||||||||||||||||| ||| |  | |||||||||||| ||||  | ||||||||||||    
T  18672509 gagaaaagagtcacaaagtgtatgtaaagatttgatgaagcatctttaattcaatgcaatgtaatttatttttctttaagtt 18672590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 5892750 - 5892718
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatca 112  Q
    |||||||||||| ||||||||||||||||||||    
T  5892750 tagtttttcatatgaaaaacgggtcacaaatca 5892718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 17132856 - 17132794
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatcactattacagaattctaaaactcaaagtacc 142  Q
    |||||||||||||||||||||| |||||||||| ||||| |||||||||  ||| ||||||||    
T  17132856 tagtttttcataggaaaaacggttcacaaatcattattatagaattctagcactgaaagtacc 17132794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 13906027 - 13905995
Alignment:
Q  81 agtttttcataggaaaaacgggtcacaaatcac 113  Q
    |||||||||||||||||||||||||||| ||||    
T  13906027 agtttttcataggaaaaacgggtcacaattcac 13905995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 19879034 - 19878982
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatcactattacagaattctaaaac 132  Q
    ||||||| ||||||||||||||||| ||||||||   ||||||||||||||||    
T  19879034 tagttttccataggaaaaacgggtcgcaaatcacctatacagaattctaaaac 19878982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 30999851 - 30999882
Alignment:
Q  83 tttttcataggaaaaacgggtcacaaatcact 114  Q
    ||||||||||||||||||||||||||||||||    
T  30999851 tttttcataggaaaaacgggtcacaaatcact 30999882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 13370528 - 13370466
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatcactattacagaattctaaaactcaaagtacc 142  Q
    |||||||| |||| ||||| |||||| |||||| ||||| |||||| ||| ||||||||||||    
T  13370528 tagtttttgatagaaaaaatgggtcagaaatcattattatagaattttaacactcaaagtacc 13370466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 24544043 - 24544009
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatcact 114  Q
    ||||||| |||||||||||||||||||||||||||    
T  24544043 tagttttccataggaaaaacgggtcacaaatcact 24544009  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 23389268 - 23389239
Alignment:
Q  83 tttttcataggaaaaacgggtcacaaatca 112  Q
    ||||||||||||||||||||||||||||||    
T  23389268 tttttcataggaaaaacgggtcacaaatca 23389239  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 31475926 - 31475894
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatca 112  Q
    ||||||||||||||||||| |||||||||||||    
T  31475926 tagtttttcataggaaaaaagggtcacaaatca 31475894  T

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Target: scaffold0454 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 13222 - 13190
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatca 112  Q
    |||||||||||||||||||||| ||||||||||    
T  13222 tagtttttcataggaaaaacggatcacaaatca 13190  T

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Target: scaffold0431 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 5059 - 5091
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatca 112  Q
    ||||||||||||||||||||||||| |||||||    
T  5059 tagtttttcataggaaaaacgggtcgcaaatca 5091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0358 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0358
Description:

Target: scaffold0358; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 15720 - 15752
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatca 112  Q
    ||||||||| |||||||||||||||||||||||    
T  15720 tagtttttcttaggaaaaacgggtcacaaatca 15752  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 25878 - 25850
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaa 108  Q
    |||||||||||||||||||||||||||||    
T  25878 tagtttttcataggaaaaacgggtcacaa 25850  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 22976630 - 22976662
Alignment:
Q  80 tagtttttcataggaaaaacgggtcacaaatca 112  Q
    |||||||||||||||||||||| ||||||||||    
T  22976630 tagtttttcataggaaaaacggatcacaaatca 22976662  T

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