View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17156_high_1 (Length: 554)

Name: NF17156_high_1
Description: NF17156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17156_high_1
NF17156_high_1
[»] chr1 (2 HSPs)
chr1 (19-535)||(26155561-26156077)
chr1 (19-535)||(26168859-26169375)
[»] chr4 (1 HSPs)
chr4 (324-526)||(28094985-28095187)


Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 535
Target Start/End: Complemental strand, 26156077 - 26155561
Alignment:
Q  19 gatgaatcaaaaactcacctagctgttcttccagatacttatcaaattcaggtggatcatcatgaccaaattctgttctaacctcaagaattataatctc 118  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26156077 gatgaatcaaaaactcacctaattgttcttccagatacttatcaaattcaggtggatcatcatgaccaaattctgttctaacctcaagaattataatctc 26155978  T
Q  119 agactgtgtttccgacaagaactttttgacatcttcaataacaacatcgatgctgtaagtaacaagaattccgtgacacacacgtcggtcttcttggaca 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26155977 agactgtgtttccgacaaaaactttttgacatcttcaataacaacatccatgctgtaagtaacaagaattccgtgacacacacgtcggtcttcttggaca 26155878  T
Q  219 cgaatgtcaataacacgtgtgcctaaagcgagctgtcgatagatagacaaagattggcattgagcaaaaggtcgagtgatgagtgggaaaccaatcttgt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26155877 cgaatgtcaataacacgtgtgcctaaagcgagctgtcgatagatagacaaagattggcattgagcaaaaggtcgagtgatgagtgggaaaccaatcttgt 26155778  T
Q  319 tggtagcagaatcatgtgttcctggccatacaatttgattgatatgaactttctctgggttgagaccattcatccagttttttctatctgatggatgata 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26155777 tggtagcagaatcatgtgttcctggccatacaatttgattgatatgaactttctctgggttgagaccattcatccagttttttctatctgatggatgata 26155678  T
Q  419 ttcagaaccagggtagtcttctcctgaggttttaagctcggttagagttttcttttcggtgtggattgtctttcttctttcaacttgttttgagacatga 518  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26155677 ttcagaaccagggtagtcttctcctgaggttttaagttcggttagagttttcttttcggtgtggattgtctttcttctttcaacttgttttgatacatga 26155578  T
Q  519 gagcccatcttcactgt 535  Q
    |||||||||||||||||    
T  26155577 gagcccatcttcactgt 26155561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 535
Target Start/End: Complemental strand, 26169375 - 26168859
Alignment:
Q  19 gatgaatcaaaaactcacctagctgttcttccagatacttatcaaattcaggtggatcatcatgaccaaattctgttctaacctcaagaattataatctc 118  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26169375 gatgaatcaaaaactcacctaattgttcttccagatacttatcaaattcaggtggatcatcatgaccaaattctgttctaacctcaagaattataatctc 26169276  T
Q  119 agactgtgtttccgacaagaactttttgacatcttcaataacaacatcgatgctgtaagtaacaagaattccgtgacacacacgtcggtcttcttggaca 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26169275 agactgtgtttccgacaaaaactttttgacatcttcaataacaacatccatgctgtaagtaacaagaattccgtgacacacacgtcggtcttcttggaca 26169176  T
Q  219 cgaatgtcaataacacgtgtgcctaaagcgagctgtcgatagatagacaaagattggcattgagcaaaaggtcgagtgatgagtgggaaaccaatcttgt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26169175 cgaatgtcaataacacgtgtgcctaaagcgagctgtcgatagatagacaaagattggcattgagcaaaaggtcgagtgatgagtgggaaaccaatcttgt 26169076  T
Q  319 tggtagcagaatcatgtgttcctggccatacaatttgattgatatgaactttctctgggttgagaccattcatccagttttttctatctgatggatgata 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26169075 tggtagcagaatcatgtgttcctggccatacaatttgattgatatgaactttctctgggttgagaccattcatccagttttttctatctgatggatgata 26168976  T
Q  419 ttcagaaccagggtagtcttctcctgaggttttaagctcggttagagttttcttttcggtgtggattgtctttcttctttcaacttgttttgagacatga 518  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26168975 ttcagaaccagggtagtcttctcctgaggttttaagttcggttagagttttcttttcggtgtggattgtctttcttctttcaacttgttttgatacatga 26168876  T
Q  519 gagcccatcttcactgt 535  Q
    |||||||||||||||||    
T  26168875 gagcccatcttcactgt 26168859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 526
Target Start/End: Original strand, 28094985 - 28095187
Alignment:
Q  324 gcagaatcatgtgttcctggccatacaatttgattgatatgaactttctctgggttgagaccattcatccagttttttctatctgatggatgatattcag 423  Q
    ||||||||||||||||| ||||| |||||    ||||| | || ||| || |||||||||     ||||||||||||||| |||||||| || || |||     
T  28094985 gcagaatcatgtgttccaggccaaacaatcattttgatcttaagtttgtcagggttgagatttgccatccagttttttctgtctgatgggtggtaatcac 28095084  T
Q  424 aaccagggtagtcttctcctgaggttttaagctcggttagagttttcttttcggtgtggattgtctttcttctttcaacttgttttgagacatgagagcc 523  Q
    |||||||||||| ||||||| || |||| || || | ||||||||||| ||| || |||||||| |||| | |||| | |||||| || || ||||| ||    
T  28095085 aaccagggtagttttctcctaagctttttagatcagatagagttttctcttctgtttggattgtttttcgtttttcgatttgtttcgacacctgagaacc 28095184  T
Q  524 cat 526  Q
    |||    
T  28095185 cat 28095187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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