View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17156_high_2 (Length: 506)

Name: NF17156_high_2
Description: NF17156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17156_high_2
NF17156_high_2
[»] chr4 (10 HSPs)
chr4 (1-495)||(27299738-27300229)
chr4 (132-493)||(20543659-20544021)
chr4 (132-478)||(43516934-43517281)
chr4 (398-485)||(40483745-40483832)
chr4 (380-490)||(32348761-32348871)
chr4 (271-486)||(19119658-19119873)
chr4 (386-475)||(42272531-42272620)
chr4 (438-486)||(34104919-34104967)
chr4 (380-485)||(52814069-52814174)
chr4 (400-489)||(55261568-55261657)
[»] chr8 (7 HSPs)
chr8 (131-495)||(9510368-9510733)
chr8 (217-495)||(6244721-6244999)
chr8 (168-490)||(25900612-25900934)
chr8 (131-188)||(6245007-6245064)
chr8 (396-490)||(15438746-15438840)
chr8 (396-490)||(15530050-15530144)
chr8 (392-481)||(6985203-6985292)
[»] chr1 (9 HSPs)
chr1 (183-495)||(5808334-5808641)
chr1 (139-490)||(26510568-26510917)
chr1 (132-480)||(33150582-33150931)
chr1 (132-478)||(13868019-13868366)
chr1 (245-478)||(45795020-45795253)
chr1 (225-332)||(1248884-1248991)
chr1 (386-493)||(52028258-52028365)
chr1 (380-485)||(5287581-5287686)
chr1 (443-487)||(6092998-6093042)
[»] chr3 (10 HSPs)
chr3 (139-493)||(34828993-34829348)
chr3 (132-478)||(40513910-40514257)
chr3 (266-478)||(20857545-20857757)
chr3 (266-354)||(20857941-20858029)
chr3 (395-489)||(14306850-14306944)
chr3 (380-481)||(11237392-11237493)
chr3 (422-489)||(4963942-4964009)
chr3 (398-489)||(46249328-46249419)
chr3 (380-485)||(7935524-7935629)
chr3 (385-485)||(34294236-34294336)
[»] chr2 (8 HSPs)
chr2 (132-493)||(11195925-11196287)
chr2 (132-493)||(32623934-32624290)
chr2 (139-303)||(144235-144400)
chr2 (131-490)||(7300255-7300614)
chr2 (380-488)||(44941267-44941375)
chr2 (423-487)||(45126374-45126438)
chr2 (398-489)||(6822992-6823083)
chr2 (395-488)||(31265804-31265897)
[»] chr7 (9 HSPs)
chr7 (132-478)||(35213222-35213569)
chr7 (139-303)||(26855477-26855642)
chr7 (293-486)||(38488844-38489037)
chr7 (380-490)||(30802227-30802337)
chr7 (398-485)||(27724575-27724662)
chr7 (389-486)||(33821984-33822081)
chr7 (398-485)||(27096724-27096811)
chr7 (398-485)||(27181492-27181579)
chr7 (386-488)||(44846236-44846338)
[»] chr5 (12 HSPs)
chr5 (139-472)||(21368129-21368461)
chr5 (221-486)||(979381-979646)
chr5 (230-475)||(5099940-5100185)
chr5 (380-490)||(5909516-5909626)
chr5 (443-489)||(18718464-18718510)
chr5 (380-490)||(22179432-22179542)
chr5 (399-490)||(27679669-27679760)
chr5 (398-490)||(379490-379582)
chr5 (211-322)||(34369540-34369651)
chr5 (448-490)||(16906882-16906924)
chr5 (396-489)||(13735357-13735450)
chr5 (392-489)||(24177191-24177288)
[»] chr6 (6 HSPs)
chr6 (139-303)||(14687219-14687384)
chr6 (386-490)||(6936969-6937073)
chr6 (398-490)||(31706348-31706440)
chr6 (446-485)||(7014632-7014671)
chr6 (419-486)||(33095552-33095619)
chr6 (388-478)||(14320582-14320672)
[»] scaffold0246 (1 HSPs)
scaffold0246 (398-485)||(21684-21771)
[»] scaffold0048 (1 HSPs)
scaffold0048 (386-484)||(64208-64306)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 27300229 - 27299738
Alignment:
Q  1 cttatacttagcaatctagttttttagaaagaaatttannnnnnngaaaatgttacgaagaatagcttttcgtttaaaagttaaaaatcatatatannnn 100  Q
    |||||||||| || || ||||| |||||||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||   ||         
T  27300229 cttatacttaacattccagtttcttagaaagaaatttatttttttgaaaaagttacgaagaatagcttttcgtttaaaagttaaaaatca---atttttt 27300133  T
Q  101 nnnnnnngctaaaatgattttcttaaaaatcttatttcttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggt 200  Q
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  27300132 tttttttgctaaaatgattttcttaaaaatcttatttcttcgttgcgccactttcggtacattgtggcattatatcagatgttggatcggaataccaggt 27300033  T
Q  201 gttgac-cccctaatattagcgaccatttcattcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattacttt 299  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||    
T  27300032 gttgacccccctaatattagcgaccatttcattcaatttactcactctacaggtcacttaaaggctcgtcaatccttccttcaacttatttggtt-cttt 27299934  T
Q  300 gtgtctggttgatttcgaatgaatgtaacaacatatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttg 399  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||       ||||||||||||||||||||    
T  27299933 gtgtctggttggtttggaacgaatgtaacaacatatttcataacaatatccaaaccaccattgaacagccggcagaaaaagtaaagtttcactctttttg 27299834  T
Q  400 gtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttgcttct 495  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||||||||  || ||||||||||||||||||||| |||||| ||| |||||    
T  27299833 gtggcttaaagctaataagaccacttttgtgcacggtactcacagatggtggttggaccctttattatgtttgggtatcaactgacatttacttct 27299738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 132 - 493
Target Start/End: Complemental strand, 20544021 - 20543659
Alignment:
Q  132 ttatttcttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccct-aatattagcgaccatttca 230  Q
    |||||| |||| ||||||||||| ||| |||| ||||||| |||||||| |||||||||||| ||||||| ||||||| | ||||||   ||||||||||    
T  20544021 ttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcaggtgctgacccctttaatattgatgaccatttca 20543922  T
Q  231 ttcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaa 330  Q
    |||||||||||||||||||| |||||| ||||||||||||  | || |||||||||||||| ||||||||||| ||| || ||| ||||||| |||| ||    
T  20543921 ttcagtttactcactctacaggtcactcaaaggctcgtcagccatttcttcaacttatttggttactttgtgtttgggtggtttggaatgaacgtaataa 20543822  T
Q  331 catatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttg 430  Q
     | | ||  ||| ||||||||||||||  ||||||| |||||       || |  ||||| ||||| ||||||||||||||||| ||||||| |||| ||    
T  20543821 tagactttttaataatatccaaaccacggttgaacaactagcagataaagttagatttcattctttatggtggcttaaagctaacaaagccaattttatg 20543722  T
Q  431 cacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttgctt 493  Q
     | ||||| || ||||||||||| || |||||||||||| ||||| | ||  |||||||||||    
T  20543721 tatggtacccaaagatggtggtcggaccctttattatgtctgggtttagatcgacctttgctt 20543659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 132 - 478
Target Start/End: Original strand, 43516934 - 43517281
Alignment:
Q  132 ttatttcttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccct-aatattagcgaccatttca 230  Q
    |||||| | ||||| || ||||||||||| || ||||||  ||||||||||||||| ||||| ||||||| ||| ||||| ||||||   ||||||||||    
T  43516934 ttatttatacattgtgctactttcggtactttgtggcattttatcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgaccatttca 43517033  T
Q  231 ttcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaa 330  Q
    || |||| ||||| |||||| |||||| || |||||||||||||||||||||||||||||| ||||||||||| |||||| ||| ||||||| |||| ||    
T  43517034 tttagttcactcattctacaggtcactcaagggctcgtcaatccttccttcaacttatttggttactttgtgtttggttggtttggaatgaacgtaataa 43517133  T
Q  331 catatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttg 430  Q
     | | || |||| ||||||||||| ||||| |||| |||||        || || | ||||||||| |||||||| || |||||||| |||| |||  ||    
T  43517134 tagactttataataatatccaaacaaccatggaacggctagtagaaaaagttaaatatcactctttgtggtggctaaaggctaataaggccaatttgatg 43517233  T
Q  431 cacggtactcacagatggtggtcagatcctttattatgtttgggtatc 478  Q
     ||||||| || |||||||||||| | |||||||||||||||||||||    
T  43517234 tacggtacacaaagatggtggtcataccctttattatgtttgggtatc 43517281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 40483832 - 40483745
Alignment:
Q  398 tggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgac 485  Q
    ||||||||||||| |||||| ||||| ||| |||||||| |||| ||||||||||| || || ||||| ||||||||| | |||||||    
T  40483832 tggtggcttaaagttaataatgccacgtttgtgcacggttctcagagatggtggtcggaccccttattgtgtttgggtcttgactgac 40483745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 490
Target Start/End: Original strand, 32348761 - 32348871
Alignment:
Q  380 gtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcg 479  Q
    ||||| |||||||| | ||||||||| |||||||| |  ||||  ||| || ||||| |||| ||||||||||| ||||||||  | |||||||||||||    
T  32348761 gtaaaatttcactcgtattggtggctgaaagctaagaccgccatgtttgtgtacggttctcagagatggtggtcggatcctttgatttgtttgggtatcg 32348860  T
Q  480 actgacctttg 490  Q
    ||| |||||||    
T  32348861 actaacctttg 32348871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 486
Target Start/End: Complemental strand, 19119873 - 19119658
Alignment:
Q  271 atccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaacatatttcataacaatatccaaaccaccattgaacagcta 370  Q
    |||||||||||| ||  |||| ||||||||||||||| || ||| ||||||| |||| |||| | |   ||| ||||||||| ||||||| ||||| ||     
T  19119873 atccttccttcagctcgtttggttactttgtgtctggatggtttggaatgaacgtaataacaaaatatttaataatatccaagccaccatagaacaactc 19119774  T
Q  371 gcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtt 470  Q
             || || ||||| || || |||||||||||||||||||| | ||  ||| ||||||  ||| | || ||||||||||| | ||| ||||||     
T  19119773 ttataaaaagttaaatttcattcgttatggtggcttaaagctaataatgtcaagtttgtgcacgacacttagagttggtggtcagaccttttgttatgtc 19119674  T
Q  471 tgggtatcgactgacc 486  Q
    ||||||||||||||||    
T  19119673 tgggtatcgactgacc 19119658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 42272620 - 42272531
Alignment:
Q  386 tttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggt 475  Q
    ||||| ||||| ||||||||||| ||||| || ||||| ||| || |||||| ||| ||||||||||| || || ||| |||||||||||    
T  42272620 tttcattctttatggtggcttaaggctaaaaatgccacatttgtgaacggtattcagagatggtggtcggaccccttagtatgtttgggt 42272531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 34104967 - 34104919
Alignment:
Q  438 ctcacagatggtggtcagatcctttattatgtttgggtatcgactgacc 486  Q
    |||| ||||||||||| || ||||| |||||||||||||||||||||||    
T  34104967 ctcagagatggtggtcggaccctttgttatgtttgggtatcgactgacc 34104919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 485
Target Start/End: Complemental strand, 52814174 - 52814069
Alignment:
Q  380 gtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcg 479  Q
    ||||| ||||| || || |||||||||||||| || |||  ||||||| || ||||| |||| || ||||||||  | |||||||  ||||||||||| |    
T  52814174 gtaaaatttcattcgttgtggtggcttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattg 52814075  T
Q  480 actgac 485  Q
    ||||||    
T  52814074 actgac 52814069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 55261657 - 55261568
Alignment:
Q  400 gtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgaccttt 489  Q
    |||||| |||||||| |||||||||||| || | ||| |||| ||||||||||  || || ||| | ||  |||||||||||||||||||    
T  55261657 gtggctgaaagctaacaaagccacttttgtgtatggttctcagagatggtggttggacccgttactttgactgggtatcgactgaccttt 55261568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 131 - 495
Target Start/End: Complemental strand, 9510733 - 9510368
Alignment:
Q  131 cttatttcttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccc-taatattagcgaccatttc 229  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  9510733 cttatttcttcattgcgccactttcagtacattgtggcatcatatcaggtgttggatcggaataccaggtgttgacccccctaatattagcgaccatttc 9510634  T
Q  230 attcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaaca 329  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||| ||||||    
T  9510633 attcagtttactcactctacaagtcactcaaaggctcgtcaatccttccttcaacttatttggttacattgtgtctggttggtttcgaacgaacgtaaca 9510534  T
Q  330 acatatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccactttttt 429  Q
    ||| ||||||||||||||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  9510533 acaaatttcataacaatatccaaaccaccattgaacaactagcagaaaaagtaaagtttcactctttttggtggcttaaagctaataaggccacttttgt 9510434  T
Q  430 gcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttgcttct 495  Q
    ||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||    
T  9510433 gcagggtactcacagatggtggtcggaccctttattatgtttgggtatcgactgacctttacttct 9510368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 217 - 495
Target Start/End: Complemental strand, 6244999 - 6244721
Alignment:
Q  217 tagcgaccatttcattcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcg 316  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  6244999 tagcgaccatttcattcagtttactcactctacaggtcacttaaaggctcgtcaatccttccttcaacttatttggttactttgtgtctggttggttt-g 6244901  T
Q  317 aatgaatgtaacaacatatttca-taacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaat 415  Q
     ||||| ||||||||| |||||| ||||||||||||||||||||| ||||| |||||       || ||||||||||||||||| |||||||||||||||    
T  6244900 tatgaacgtaacaacagatttcaataacaatatccaaaccaccatcgaacaactagcagaaaaagtgaagtttcactctttttgatggcttaaagctaat 6244801  T
Q  416 aaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttgcttct 495  Q
    || || |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6244800 aaggctacttttgtgtacggtactcacagatggtggtcagaccctttattatgtttgggtatcgactgacctttgcttct 6244721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 168 - 490
Target Start/End: Complemental strand, 25900934 - 25900612
Alignment:
Q  168 catcatatcaggtgttggatcggaatatcaggtgttgaccccct-aatattagcgaccatttcattcagtttactcactctacaagtcacttaaaggctc 266  Q
    |||||||| |||| |||||||||||| ||||||||||||||| | ||||||   |||||||||||||||||||||||||||||| ||||||| |||||||    
T  25900934 catcatattaggtcttggatcggaatgtcaggtgttgacccctttaatattgatgaccatttcattcagtttactcactctacaggtcacttgaaggctc 25900835  T
Q  267 gtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaacatatttcataacaatatccaaaccaccattgaaca 366  Q
    ||||||| || ||||||||||| || |||||||||| ||||||| ||| ||||||| ||||||||| | ||||||| ||||||||| ||| |||||||||    
T  25900834 gtcaatcatttcttcaacttatatggttactttgtgcctggttggtttggaatgaacgtaacaacagacttcataataatatccaatccaacattgaaca 25900735  T
Q  367 gctagcnnnnnnngtaaagtttcactctttttggtggcttaaagc-taataaagccacttttttgcacggtactcacagatggtggtcagatcctttatt 465  Q
     ||||        || || ||| |||| |||| |||||||||||| |||||| ||||||||| || ||||| |||| |||| |||||  || ||||||||    
T  25900734 actagtagaaaaggttaaattttactcctttt-gtggcttaaagcttaataaggccacttttatgtacggttctcaaagat-gtggttggaccctttatt 25900637  T
Q  466 atgtttgggtatcgactgacctttg 490  Q
    ||||||||||||||| |||||||||    
T  25900636 atgtttgggtatcgattgacctttg 25900612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 6245064 - 6245007
Alignment:
Q  131 cttatttcttcattgcgccactttcggtacattatggcatcatatcaggtgttggatc 188  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6245064 cttatttcttcattgcgccactttcggtacattgtggcatcatatcaggtgttggatc 6245007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 490
Target Start/End: Complemental strand, 15438840 - 15438746
Alignment:
Q  396 tttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttg 490  Q
    ||||||||||||| ||||||||  ||| |||| || ||| |||| | ||||||||||| || ||| |  | ||||||||||||||||||||||||    
T  15438840 tttggtggcttaaggctaataacaccaattttgtgtacgatactaagagatggtggtcggaccctatgctttgtttgggtatcgactgacctttg 15438746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 490
Target Start/End: Complemental strand, 15530144 - 15530050
Alignment:
Q  396 tttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttg 490  Q
    ||||||||||||| ||||||||  ||| |||| || ||| |||| | ||||||||||| || ||| |  | ||||||||||||||||||||||||    
T  15530144 tttggtggcttaaggctaataacaccaattttgtgtacgatactaagagatggtggtcggaccctatgctttgtttgggtatcgactgacctttg 15530050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 481
Target Start/End: Original strand, 6985203 - 6985292
Alignment:
Q  392 tctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgac 481  Q
    ||||| |||||||| ||||||| ||||||||| ||| || |||||  ||| ||||||||||| || ||| |  | |||||||||||||||    
T  6985203 tctttatggtggctaaaagctagtaaagccacatttgtgtacggttatcaaagatggtggtcggaccctatgctttgtttgggtatcgac 6985292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 173; Significance: 8e-93; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 183 - 495
Target Start/End: Complemental strand, 5808641 - 5808334
Alignment:
Q  183 tggatcggaatatcaggtgttgac-cccctaatattagcgaccatttcattcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttc 281  Q
    |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  5808641 tggatcggaataccatgtgttgactcccctaatattagcgaccatttcattcagtttactcactcgacatgtcactcaaaggctcgtcaatccttccttc 5808542  T
Q  282 aacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaacatatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngt 381  Q
    |||||||||| |||||||||||||||||| ||| ||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||       ||    
T  5808541 aacttatttggttactttgtgtctggttggtttggaacgaacgtaacaacaaatttcataacaatatccaaaccaccatcgaacagctagcagaaaaagt 5808442  T
Q  382 aaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgac 481  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||| |||||||||  ||||||    ||||  | |||||||||||||||||||||||     
T  5808441 aaagtttcactctttttagtggcttaaagctaataaggtcacttttgtgcacggta--cacaga----ggtcgaaccctttattatgtttgggtatcgat 5808348  T
Q  482 tgacctttgcttct 495  Q
    || |||||||||||    
T  5808347 tgtcctttgcttct 5808334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 139 - 490
Target Start/End: Original strand, 26510568 - 26510917
Alignment:
Q  139 ttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccct-aatattagcgaccatttcattcagtt 237  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| | |||||    |||||||||||||||||    
T  26510568 ttcattgtgccattttcggtacattgtggcatcatatcaggtcttggatcggaatgtcaggtgttgacccctttaatatcgatgaccatttcattcagtt 26510667  T
Q  238 tactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaacatattt 337  Q
    ||||||||||||| ||||||  ||||||||||||| |||| |||||||||| || |||||||||| ||||||  | | ||||||| ||||||||| | ||    
T  26510668 tactcactctacaggtcactcgaaggctcgtcaattcttc-ttcaacttatatggttactttgtgcctggtttgtgtggaatgaacgtaacaacagactt 26510766  T
Q  338 cataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggta 437  Q
    ||||| ||||||||||||| ||||||||| ||||        ||||| |||||||| ||||||| ||||||||||||||| ||||||||| || |||||     
T  26510767 cataataatatccaaaccaacattgaacaactagtagaaaaagtaaaatttcactccttttggtagcttaaagctaataaggccacttttatgtacggtt 26510866  T
Q  438 ctcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttg 490  Q
    |||| ||||  ||||| || | ||||||||||||||||||||| | |||||||    
T  26510867 ctcaaagat--tggtcggaccatttattatgtttgggtatcgattcacctttg 26510917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 132 - 480
Target Start/End: Complemental strand, 33150931 - 33150582
Alignment:
Q  132 ttatttcttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccct-aatattagcgaccatttca 230  Q
    |||||| |||| ||||||||||| ||  |||| ||||||| |||||||| |||||||||||| |||||||  |||||||| ||||||   ||||||||||    
T  33150931 ttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaatgtcaggtgccgacccccttaatattgatgaccatttca 33150832  T
Q  231 ttcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaa 330  Q
    |||||||||||||||||||| |||||| ||| ||||||||||| || || ||||||||||| ||||||||||| |||||| ||| ||||||| |||| ||    
T  33150831 ttcagtttactcactctacaggtcactcaaaagctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataa 33150732  T
Q  331 catatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttg 430  Q
     | | |  |||| || |||||||||||| ||||||| |||||       ||||  ||||||||||| ||||||||||||||||| |||| || |||| ||    
T  33150731 tagactctataataacatccaaaccaccgttgaacaactagcagataaagtaagatttcactctttatggtggcttaaagctaacaaagtcaattttatg 33150632  T
Q  431 cacggtactcacagatggtggtcagatcctttattatgtttgggtatcga 480  Q
     |||||||||| ||||||||||| || |||||||||||| ||||||||||    
T  33150631 tacggtactcaaagatggtggtcggaacctttattatgtctgggtatcga 33150582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 132 - 478
Target Start/End: Original strand, 13868019 - 13868366
Alignment:
Q  132 ttatttcttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccct-aatattagcgaccatttca 230  Q
    |||||||| ||||| || ||||| ||||| |||||||||  | ||||||||||||| ||||| ||||||| ||| ||||| ||||||   ||||||||||    
T  13868019 ttatttctacattgtgctacttttggtactttatggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgaccatttca 13868118  T
Q  231 ttcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaa 330  Q
    ||||||| ||||| |||||| ||||||    ||| |||||||||||||| ||||||||||| ||||| ||||| |||||| ||| ||||||| |||| ||    
T  13868119 ttcagttcactcattctacaggtcactcccgggcccgtcaatccttcctacaacttatttggttactatgtgtttggttggtttggaatgaacgtaataa 13868218  T
Q  331 catatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttg 430  Q
     | | || |||| ||||||||||| ||||| ||||| ||||        || || | ||||||||| |||||||| ||||||||||| |||| |||| ||    
T  13868219 tagactttataataatatccaaacaaccatggaacaactagtaaaaaaagttaaatatcactctttgtggtggctaaaagctaataaggccaattttatg 13868318  T
Q  431 cacggtactcacagatggtggtcagatcctttattatgtttgggtatc 478  Q
     ||||||| || ||||||||||| || |||||||||||||||||||||    
T  13868319 tacggtacacaaagatggtggtcggaccctttattatgtttgggtatc 13868366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 245 - 478
Target Start/End: Complemental strand, 45795253 - 45795020
Alignment:
Q  245 tctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaacatatttcataaca 344  Q
    |||||| |||||| |  ||| |||||||||||| | ||||||||||| ||||| ||||| |||||| ||| ||||| | |||| || | | || |||| |    
T  45795253 tctacaggtcactcacgggcccgtcaatccttcgtacaacttatttggttactatgtgtttggttggtttggaatgtacgtaataatagactttataata 45795154  T
Q  345 atatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacag 444  Q
    ||||| |||| ||||| ||| ||||||        || || | ||||||||| |||||||| || | |||||| |||| |||| || ||||||| || |     
T  45795153 atatcaaaacaaccatggaagagctagtagaaaaagttaaatatcactctttgtggtggctaaaggttaataaggccaattttatgtacggtacacaaaa 45795054  T
Q  445 atggtggtcagatcctttattatgtttgggtatc 478  Q
    ||||||||| || |||||||||||||||||||||    
T  45795053 atggtggtcggaccctttattatgtttgggtatc 45795020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 1248884 - 1248991
Alignment:
Q  225 atttcattcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatg 324  Q
    |||| |||||||||| ||||| |||| ||||||  |||||  ||| |||||| |||||||||||||| ||||||||||| ||| |||||| ||||||| |    
T  1248884 attttattcagtttattcactatacaggtcactcgaaggcgtgtcgatcctttcttcaacttatttggttactttgtgtgtggatgatttggaatgaacg 1248983  T
Q  325 taacaaca 332  Q
     |||||||    
T  1248984 caacaaca 1248991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 493
Target Start/End: Complemental strand, 52028365 - 52028258
Alignment:
Q  386 tttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgac 485  Q
    ||||| ||||| ||||||||| ||||||| ||||| | |||  || | |||||||| ||||||||||| || |||||||| ||||||||| | ||  |||    
T  52028365 tttcattctttatggtggcttcaagctaacaaagcaaatttcatgtatggtactcaaagatggtggtcggaccctttattttgtttgggtttagatcgac 52028266  T
Q  486 ctttgctt 493  Q
    ||||||||    
T  52028265 ctttgctt 52028258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 485
Target Start/End: Complemental strand, 5287686 - 5287581
Alignment:
Q  380 gtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcg 479  Q
    ||||| ||||| || || |||||||||||||| || |||  ||||||| || ||||| |||| || ||||||||  | |||||||  ||||||||||| |    
T  5287686 gtaaaatttcattcgttgtggtggcttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattg 5287587  T
Q  480 actgac 485  Q
    ||||||    
T  5287586 actgac 5287581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 487
Target Start/End: Original strand, 6092998 - 6093042
Alignment:
Q  443 agatggtggtcagatcctttattatgtttgggtatcgactgacct 487  Q
    ||||||||||| ||||| || | ||||||||||||||||||||||    
T  6092998 agatggtggtcggatccgttgtaatgtttgggtatcgactgacct 6093042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 8e-87; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 139 - 493
Target Start/End: Complemental strand, 34829348 - 34828993
Alignment:
Q  139 ttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccct-aatattagcgaccatttcattcagtt 237  Q
    ||||||| ||||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||| ||||| | ||||||   |||||||||||||||||    
T  34829348 ttcattgtgccactttcagtacattgtggcatcatatcaggtcttggatcggaatgtcaggtgttaacccctttaatattgatgaccatttcattcagtt 34829249  T
Q  238 tactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaacatattt 337  Q
    ||||||||||||| ||||||  ||||||||||||||||| ||||||||||| |  |||||||||| || |||| ||| ||||||||||||||||| | ||    
T  34829248 tactcactctacaggtcactcgaaggctcgtcaatcctttcttcaacttatatagttactttgtgccttgttggtttggaatgaatgtaacaacagactt 34829149  T
Q  338 cataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggta 437  Q
    ||||| ||||||||||||| ||||||||| ||||        || || |||||||| ||||||||||||||||||||||| ||||||||| || ||| |     
T  34829148 cataataatatccaaaccaacattgaacaactagtagaaaaagttaaatttcactccttttggtggcttaaagctaataaggccacttttatgtacgatt 34829049  T
Q  438 ctcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttgctt 493  Q
    |||| |||||||||||  | ||||||||||||||| ||||||| ||||||||||||    
T  34829048 ctcaaagatggtggtcgaaccctttattatgtttgagtatcgattgacctttgctt 34828993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 132 - 478
Target Start/End: Original strand, 40513910 - 40514257
Alignment:
Q  132 ttatttcttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccct-aatattagcgaccatttca 230  Q
    |||||||| |||||  | ||||| ||||| |||||||||  | ||||||||||||| ||||| ||| ||| ||| ||||| ||||||   || |||||||    
T  40513910 ttatttctacattgtcctacttttggtactttatggcattttgtcaggtgttggattggaatgtcatgtgctgatccccttaatattgatgaacatttca 40514009  T
Q  231 ttcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaa 330  Q
    |||||||  |||| |||| | |||||| |  ||| ||||||||||| || ||||||||||| ||||| ||||| |||||| ||| ||||||| |||| ||    
T  40514010 ttcagttcgctcattctataggtcactcacgggcccgtcaatcctttctacaacttatttggttactatgtgtttggttggtttggaatgaacgtaataa 40514109  T
Q  331 catatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttg 430  Q
     | | |  |||| ||||||||||||||||| ||||| ||||        || || | ||||||||| |||||||| || |||||||| ||||  ||| ||    
T  40514110 tagactctataataatatccaaaccaccatggaacaactagtagaaaaagttaaatatcactctttgtggtggctaaaggctaataaggccaactttatg 40514209  T
Q  431 cacggtactcacagatggtggtcagatcctttattatgtttgggtatc 478  Q
     ||||| | || | ||||||||| || |||||||||||||||||||||    
T  40514210 tacggttcacaaaaatggtggtcggaccctttattatgtttgggtatc 40514257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 266 - 478
Target Start/End: Complemental strand, 20857757 - 20857545
Alignment:
Q  266 cgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaacatatttcataacaatatccaaaccaccattgaac 365  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||| ||| ||||||| |||| || | | || |||| ||||||||||| ||||| ||||    
T  20857757 cgtcaatccttcctacaacttatttggttactatgtgtctggttggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaac 20857658  T
Q  366 agctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttatt 465  Q
    | ||||        || || |  |||||||| |||||||| || |||||||| |||| |||| || ||||||| || ||||||||||| || ||||||||    
T  20857657 aactagtagaaaaagttaaataccactctttgtggtggctcaaggctaataaggccaattttatgtacggtacacaaagatggtggtcggaccctttatt 20857558  T
Q  466 atgtttgggtatc 478  Q
    || ||||||||||    
T  20857557 atatttgggtatc 20857545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 20858029 - 20857941
Alignment:
Q  266 cgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaacatatttcataacaatatccaaac 354  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||| ||| ||||||| |||| || | | || |||| |||||||||||    
T  20858029 cgtcaatccttcctacaacttatttggttactatgtgtctggttggtttggaatgaacgtaataatagactttataataatatccaaac 20857941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 489
Target Start/End: Complemental strand, 14306944 - 14306850
Alignment:
Q  395 ttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgaccttt 489  Q
    ||||||||| | |||||||||||   || |||| || ||||| |||| |||||||||||  | |||||||| |||||||||||||||||||||||    
T  14306944 ttttggtggttaaaagctaataacatcaattttgtgtacggttctcagagatggtggtcgaaccctttattttgtttgggtatcgactgaccttt 14306850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 481
Target Start/End: Complemental strand, 11237493 - 11237392
Alignment:
Q  380 gtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcg 479  Q
    ||||| || |||||||| |||||||| ||||||| ||||| ||| ||| || ||||| |||| || ||||||||||||||| |  | ||||| |||||||    
T  11237493 gtaaaattgcactctttatggtggctaaaagctagtaaagtcacatttgtgtacggttctcaaaggtggtggtcagatcctatgctttgtttaggtatcg 11237394  T
Q  480 ac 481  Q
    ||    
T  11237393 ac 11237392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 489
Target Start/End: Complemental strand, 4964009 - 4963942
Alignment:
Q  422 acttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgaccttt 489  Q
    |||||| || ||||| |||| ||||||||||| || |||||| | ||| |||||||||||||||||||    
T  4964009 acttttgtgtacggttctcagagatggtggtcggaccctttactttgtctgggtatcgactgaccttt 4963942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 489
Target Start/End: Original strand, 46249328 - 46249419
Alignment:
Q  398 tggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgaccttt 489  Q
    |||||| | |||| ||||||  ||| |||| || ||||| | || ||||||||||| || |||||| | |||||||||||||||||||||||    
T  46249328 tggtggttaaaagttaataacaccaattttgtgtacggttcccaaagatggtggtcggaccctttactttgtttgggtatcgactgaccttt 46249419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 485
Target Start/End: Complemental strand, 7935629 - 7935524
Alignment:
Q  380 gtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcg 479  Q
    ||||| ||||| ||||| |||||||||||||| || ||| |||||||| || ||||| |||| || |||| |||  | ||||| |  ||| |||||||||    
T  7935629 gtaaaatttcattctttgtggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttggtagtcgaaccctttttattgtctgggtatcg 7935530  T
Q  480 actgac 485  Q
    ||||||    
T  7935529 actgac 7935524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 485
Target Start/End: Original strand, 34294236 - 34294336
Alignment:
Q  385 gtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactga 484  Q
    |||||||||||| |||||| | || |||||||| |||   ||| |||| || ||||| | |||||||||  | ||| | |||||||||||||||||||||    
T  34294236 gtttcactctttgtggtggttaaaggctaataatgccttgtttgtgcatggcactcagatatggtggtcgaaccctatcttatgtttgggtatcgactga 34294335  T
Q  485 c 485  Q
    |    
T  34294336 c 34294336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 132 - 493
Target Start/End: Complemental strand, 11196287 - 11195925
Alignment:
Q  132 ttatttcttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccct-aatattagcgaccatttca 230  Q
    |||||| |||| ||||||||||| ||| |||| ||||||| |||||||| ||||||| |||| |||||||| |||| ||| ||||||   ||||||||||    
T  11196287 ttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcagaatgtcaggtgtcgacctccttaatattgatgaccatttca 11196188  T
Q  231 ttcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaa 330  Q
    |||||||||||||||||||| |||||| ||||||||||||||  || || ||||||||||| ||||||| | | |||||| ||| ||||||| |||| ||    
T  11196187 ttcagtttactcactctacaggtcactcaaaggctcgtcaataatttctccaacttatttggttactttttatttggttggtttggaatgaacgtaataa 11196088  T
Q  331 catatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttg 430  Q
     ||  || |||| || |||||||||||| ||||||| |||||       ||||| ||||||||||| ||||||||||||||||| |||| || |||| ||    
T  11196087 tatgctttataataacatccaaaccaccgttgaacaactagcagataaagtaaaatttcactctttatggtggcttaaagctaacaaagtcaattttatg 11195988  T
Q  431 cacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttgctt 493  Q
      ||||||||| ||||||||||| || |||||||||||| || ||||||| ||||||||||||    
T  11195987 ttcggtactcaaagatggtggtcggaccctttattatgtctgagtatcgattgacctttgctt 11195925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 132 - 493
Target Start/End: Complemental strand, 32624290 - 32623934
Alignment:
Q  132 ttatttcttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccctaatattagcgaccatttcat 231  Q
    |||||| |||||||||||||||| ||| |||| ||||||| |||||||| |||||| ||||| ||||||| ||||||     ||||   |||||||||||    
T  32624290 ttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggattggaatgtcaggtgctgaccct----tattgatgaccatttcat 32624195  T
Q  232 tcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaac 331  Q
    ||||||||||||||||||| |||||| |||||||||||| || || |||||||||||||| ||||||||||| ||| || ||| ||| ||| |||| ||     
T  32624194 tcagtttactcactctacaggtcactcaaaggctcgtcagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataat 32624095  T
Q  332 atatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgc 431  Q
    | | ||  ||| ||||||||||||||  ||||||| |||||       ||  | ||||| ||||| | ||||||| ||||||| ||||| | |||| ||     
T  32624094 agactttttaataatatccaaaccacggttgaacaactagcagataaagttcaatttcattctttatagtggcttcaagctaacaaagcaaattttatgt 32623995  T
Q  432 acggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttgctt 493  Q
    | ||||| || | ||||||||| || |||||||| ||||||||| | ||  |||||||||||    
T  32623994 atggtaccca-aaatggtggtcggaccctttattttgtttgggtttagatcgacctttgctt 32623934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 139 - 303
Target Start/End: Original strand, 144235 - 144400
Alignment:
Q  139 ttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccctaa-tattagcgaccatttcattcagtt 237  Q
    |||||||| ||||||| ||| | || ||||||| |||||||| |||||||||||| ||||||| ||||||  | | |||||  |||||||||||||||||    
T  144235 ttcattgcaccacttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctgacccttttactattaatgaccatttcattcagtt 144334  T
Q  238 tactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgt 303  Q
    |||||||||||||||||||| |||||||||||| || || |||||||||||||| |||||||||||    
T  144335 tactcactctacaagtcactcaaaggctcgtcagtcatttcttcaacttatttggttactttgtgt 144400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 490
Target Start/End: Complemental strand, 7300614 - 7300255
Alignment:
Q  131 cttatttcttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccc-taatattagcgaccatttc 229  Q
    ||||||||||||||| | || ||||||| | || |||||  |||||| || ||||||  |  | |||||||||||  | | ||||||| | || ||||||    
T  7300614 cttatttcttcattgtgacagtttcggttctttgtggcagtatatcatgtcttggattagtgtgtcaggtgttgatactcataatatttgtgagcatttc 7300515  T
Q  230 attcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaaca 329  Q
    |||||||||||||||| |||  |||| || | | | |||| ||| || ||||| ||||||||  |||||||||||||| || ||| ||||||||| ||||    
T  7300514 attcagtttactcactatactggtcatttgatgacgcgtcgatcttttcttcagcttatttggctactttgtgtctggatggtttggaatgaatgcaaca 7300415  T
Q  330 acatatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccactttttt 429  Q
    ||  | |   ||| || ||||||||| |||||||||| ||          || || |||||||| |||| |||||||||||| ||||  ||||| ||| |    
T  7300414 acggactatttaataacatccaaacccccattgaacaactcatagaaaaggttaaatttcactcgttttagtggcttaaagccaatat-gccacgtttgt 7300316  T
Q  430 gcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttg 490  Q
    |  ||||  ||| ||||||||||| || ||||| |||||||||||||||||||||||||||    
T  7300315 gtgcggttgtcaaagatggtggtcggaccctttgttatgtttgggtatcgactgacctttg 7300255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 488
Target Start/End: Original strand, 44941267 - 44941375
Alignment:
Q  380 gtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcg 479  Q
    ||||||||||| || ||||||||||| |||||||| || | ||| ||| || ||||| | || ||||||||||| ||||||||  | |||||| |||||     
T  44941267 gtaaagtttcattcgttttggtggctaaaagctaacaatgtcacatttgtgtacggttcacagagatggtggtcggatcctttgatgtgtttgagtatca 44941366  T
Q  480 actgacctt 488  Q
    ||| |||||    
T  44941367 actaacctt 44941375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 487
Target Start/End: Complemental strand, 45126438 - 45126374
Alignment:
Q  423 cttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacct 487  Q
    ||||| || ||||| |||| |||||||||||||| |||||| | | |||||||||||||||||||    
T  45126438 cttttatgtacggttctcagagatggtggtcagaccctttactttatttgggtatcgactgacct 45126374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 489
Target Start/End: Complemental strand, 6823083 - 6822992
Alignment:
Q  398 tggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgaccttt 489  Q
    |||||| | |||||||||||  ||| |||| || ||||| |||| |||||||||||  | |||||| | |||||||||||||| ||||||||    
T  6823083 tggtggttaaaagctaataacaccaattttgtgtacggttctcaaagatggtggtcgaaccctttactttgtttgggtatcgattgaccttt 6822992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 488
Target Start/End: Complemental strand, 31265897 - 31265804
Alignment:
Q  395 ttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctt 488  Q
    |||| |||||| |||||| ||||  |||||||| || | | | |||| ||||||||||| || |||||| | |||||||||||| |||||||||    
T  31265897 ttttagtggctaaaagctcataataccacttttgtgtatgattctcaaagatggtggtcggaccctttactttgtttgggtatcaactgacctt 31265804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 132 - 478
Target Start/End: Complemental strand, 35213569 - 35213222
Alignment:
Q  132 ttatttcttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccct-aatattagcgaccatttca 230  Q
    |||||| | ||||| || ||||||| ||| || ||||||  | ||||||||||||| ||||| ||||||||||| ||||| ||||||   ||||||||||    
T  35213569 ttatttatacattgtgctactttcgttactttgtggcattttgtcaggtgttggattggaatgtcaggtgttgatccccttaatattgatgaccatttca 35213470  T
Q  231 ttcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaa 330  Q
    ||||||| ||||| |||||| |||||| |  |||||||||||||||||| ||||||||||| ||||| ||||| |||||| ||| ||||||| |||| ||    
T  35213469 ttcagttcactcattctacaggtcactcacgggctcgtcaatccttcctacaacttatttggttactctgtgtttggttggtttggaatgaacgtaataa 35213370  T
Q  331 catatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttg 430  Q
     ||| || |||  ||||||||||| ||||| ||||||||||        || || | ||||||||| |||||| | || |||||||| |||| |||| ||    
T  35213369 tatactttatactaatatccaaacaaccatggaacagctagtagaaaaagttaaatatcactctttgtggtggttaaaggctaataaggccaattttatg 35213270  T
Q  431 cacggtactcacagatggtggtcagatcctttattatgtttgggtatc 478  Q
     ||||||| || ||||||||||| ||  |||||||||||| |||||||    
T  35213269 tacggtacacaaagatggtggtcggacgctttattatgttcgggtatc 35213222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 139 - 303
Target Start/End: Complemental strand, 26855642 - 26855477
Alignment:
Q  139 ttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccct-aatattagcgaccatttcattcagtt 237  Q
    |||||||| ||||||| ||| | || ||||||| |||||||| || ||||||||| ||||||| ||||||  | |||||||  |||||||||||||||||    
T  26855642 ttcattgcaccacttttggttctttgtggcatcttatcaggtctttgatcggaatgtcaggtgctgacccttttaatattaatgaccatttcattcagtt 26855543  T
Q  238 tactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgt 303  Q
    || |||||||||| |||||| |||||||||||| || || |||||||||||||| |||||||||||    
T  26855542 tattcactctacaggtcactcaaaggctcgtcagtcatttcttcaacttatttggttactttgtgt 26855477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 293 - 486
Target Start/End: Original strand, 38488844 - 38489037
Alignment:
Q  293 ttactttgtgtctggttgatttcgaatgaatgtaacaacatatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcact 392  Q
    ||||||||||| ||| || ||| ||||||| |||| || | | || |||| ||||||||||| ||||| ||||||||||        || || | |||||    
T  38488844 ttactttgtgtttggctggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacagctagtagaaaaagttaaatatcact 38488943  T
Q  393 ctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacc 486  Q
    |||| |||||| | || ||||||||  |||  ||| || ||||||| || |||||||||||||| ||||||||||||||| |||||||||||||    
T  38488944 ctttgtggtggttaaaggctaataagaccaactttatgtacggtacacaaagatggtggtcagaccctttattatgtttgagtatcgactgacc 38489037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 490
Target Start/End: Original strand, 30802227 - 30802337
Alignment:
Q  380 gtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcg 479  Q
    ||||| |||||||| | | ||||||| ||||||||||| ||||| ||| || ||||| |||| ||| ||||||| || |||||  | |||||||||||||    
T  30802227 gtaaattttcactcgtatcggtggctgaaagctaataacgccacgtttgtgtacggttctcagagacggtggtcggaccctttgatttgtttgggtatcg 30802326  T
Q  480 actgacctttg 490  Q
    ||| |||||||    
T  30802327 actaacctttg 30802337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 485
Target Start/End: Original strand, 27724575 - 27724662
Alignment:
Q  398 tggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgac 485  Q
    |||||| | ||||||| |||  ||| |||| || ||||| |||| ||||||||||| ||||||||| | |||||||||||||||||||    
T  27724575 tggtggttaaaagctagtaacaccaattttatgtacggttctcaaagatggtggtcggatcctttactttgtttgggtatcgactgac 27724662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 486
Target Start/End: Original strand, 33821984 - 33822081
Alignment:
Q  389 cactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacc 486  Q
    ||||| ||||||||||| || |||||||| | ||||||  || ||||| |||| ||||||| ||| || |||||  | ||||||||||||||||||||    
T  33821984 cactcattttggtggctgaaggctaataatgtcactttcatgtacggttctcatagatggtagtcggaccctttgatttgtttgggtatcgactgacc 33822081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 27096811 - 27096724
Alignment:
Q  398 tggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgac 485  Q
    |||||||||||||| || ||| |||||||| || ||||| |||| || ||||||||  | |||||||  ||||||||||| |||||||    
T  27096811 tggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgac 27096724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 485
Target Start/End: Original strand, 27181492 - 27181579
Alignment:
Q  398 tggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgac 485  Q
    |||||||||||||| || ||| |||||||| || ||||| |||| || ||||||||  | |||||||  ||||||||||| |||||||    
T  27181492 tggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgac 27181579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 488
Target Start/End: Original strand, 44846236 - 44846338
Alignment:
Q  386 tttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgac 485  Q
    ||||| ||||| |||||  |||||||||||||  |||| ||| |||||||| |||| ||||| ||||  || || ||||| ||||||||| | |||||||    
T  44846236 tttcattctttatggtgatttaaagctaataataccacatttgtgcacggttctcagagatgatggttggaccccttattgtgtttgggtcttgactgac 44846335  T
Q  486 ctt 488  Q
    |||    
T  44846336 ctt 44846338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 139 - 472
Target Start/End: Original strand, 21368129 - 21368461
Alignment:
Q  139 ttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccct-aatattagcgaccatttcattcagtt 237  Q
    |||||||||||||||| ||| |||| ||||||| |||||||| |||||||||||| ||||||| |||||| || ||||||   |||||||||||||||||    
T  21368129 ttcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcaggtgctgaccctcttaatattgatgaccatttcattcagtt 21368228  T
Q  238 tactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaacaacatattt 337  Q
    ||||||||||||| |||||| |||||||||||| || ||||||||||||||||| ||||  ||||| ||| || ||| ||| ||| |||| || | | ||    
T  21368229 tactcactctacaggtcactcaaaggctcgtcagtcattccttcaacttatttggttac--tgtgtttgggtggtttggaacgaacgtaataatagactt 21368326  T
Q  338 cataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggta 437  Q
      ||| ||||||||||||||  ||||||| |||||       ||    ||||| ||||| ||||||||| ||||||| ||||| |  ||  || | ||||    
T  21368327 tttaataatatccaaaccacagttgaacaactagcagataaagttcgatttcattctttatggtggcttcaagctaacaaagcaaaattcatgtatggta 21368426  T
Q  438 ctcacagatggtggtcagatcctttattatgtttg 472  Q
    | || ||||||||||| ||||||||||| ||||||    
T  21368427 cccaaagatggtggtcggatcctttattttgtttg 21368461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 221 - 486
Target Start/End: Original strand, 979381 - 979646
Alignment:
Q  221 gaccatttcattcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatg 320  Q
    ||||||||||||||||| ||||| |||||| |||||| || |||||| ||||| ||||||||||||||||  |||||||| || ||| |||||| |||||    
T  979381 gaccatttcattcagttcactcattctacaggtcactcaagggctcgacaatcattccttcaacttatttagttactttgcgtttggctgatttggaatg 979480  T
Q  321 aatgtaacaacatatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagc 420  Q
    || |||| || | | || |||| ||||| ||||| ||||| ||||||| ||         | || | ||||||||| | |||||| || ||||||||  |    
T  979481 aacgtaataatagactttataataatattcaaacaaccatggaacagcaagtagaaaaatttaaatatcactctttgtagtggctaaaggctaataagcc 979580  T
Q  421 cacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacc 486  Q
    || |||| || ||||||| || ||||||||||| ||||||||||||||||||||||||||| ||||    
T  979581 caattttatgtacggtacacaaagatggtggtcggatcctttattatgtttgggtatcgaccgacc 979646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 230 - 475
Target Start/End: Original strand, 5099940 - 5100185
Alignment:
Q  230 attcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttgatttcgaatgaatgtaaca 329  Q
    |||||||||| |||||||||| |||||| |||||||||||| || || |||||||||||||| ||||||||||| ||| || ||| ||| ||| |||| |    
T  5099940 attcagtttattcactctacaggtcactcaaaggctcgtcagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaata 5100039  T
Q  330 acatatttcataacaatatccaaaccaccattgaacagctagcnnnnnnngtaaagtttcactctttttggtggcttaaagctaataaagccactttttt 429  Q
    | |   ||  ||| ||||||||||||||  ||||  | |||||       ||    ||||| ||||| ||||||||| ||||||||||||||| |||  |    
T  5100040 ataggctttttaataatatccaaaccacagttgacaatctagcagataaagttcgatttcattctttatggtggcttcaagctaataaagccaatttcat 5100139  T
Q  430 gcacggtactcacagatggtggtcagatcctttattatgtttgggt 475  Q
    | | ||||| ||  |||||||||| || |||||||| |||||||||    
T  5100140 gtatggtacccaacgatggtggtcggaccctttattttgtttgggt 5100185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 490
Target Start/End: Original strand, 5909516 - 5909626
Alignment:
Q  380 gtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcg 479  Q
    ||||| |||||||| | ||||||||| ||||| ||||| ||||||||| || ||| | |||| ||||||||||| || |||||  | ||||||||||||     
T  5909516 gtaaaatttcactcgtattggtggctgaaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccctttgatttgtttgggtatca 5909615  T
Q  480 actgacctttg 490  Q
    ||| |||||||    
T  5909616 actaacctttg 5909626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 489
Target Start/End: Original strand, 18718464 - 18718510
Alignment:
Q  443 agatggtggtcagatcctttattatgtttgggtatcgactgaccttt 489  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  18718464 agatggtggtcggatcctttattatgtttgggtatcgattgaccttt 18718510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 490
Target Start/End: Original strand, 22179432 - 22179542
Alignment:
Q  380 gtaaagtttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcg 479  Q
    ||||||||||| || ||||||||||| ||||||||||| | ||  |||  | ||||| |||| ||||||| ||| || | |||| | |||||||||||||    
T  22179432 gtaaagtttcattcattttggtggctaaaagctaataatgtcatgtttgagtacggttctcagagatggtagtcggaccatttaatttgtttgggtatcg 22179531  T
Q  480 actgacctttg 490  Q
    |||||||||||    
T  22179532 actgacctttg 22179542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 490
Target Start/End: Original strand, 27679669 - 27679760
Alignment:
Q  399 ggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttg 490  Q
    |||||||||| |||||||| | ||||||| || ||||| |||| | ||||||||| || ||| |  ||||||||||||||||| ||||||||    
T  27679669 ggtggcttaaggctaataatgtcacttttgtgtacggttctcagaaatggtggtcggaccctatgctatgtttgggtatcgaccgacctttg 27679760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 490
Target Start/End: Complemental strand, 379582 - 379490
Alignment:
Q  398 tggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttg 490  Q
    ||||||||||| ||||| || || | |||| || ||| |||||| || |||||||| || ||||| |  ||||||||||||||||||||||||    
T  379582 tggtggcttaaggctaagaacgctaattttgtgtacgatactcagagttggtggtcggaccctttgtattgtttgggtatcgactgacctttg 379490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 34369540 - 34369651
Alignment:
Q  211 taatattagcgaccatttcattcagtttactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgtctggttg 310  Q
    ||||||||| ||  ||||| | |||||||||| || |||| ||||||  ||||| ||   ||||||||| || |||||||||||||||||||| |||||     
T  34369540 taatattagtgaaaatttcttgcagtttactcgctatacaggtcactctaaggcacgaagatccttcctccagcttatttgattactttgtgtttggttc 34369639  T
Q  311 atttcgaatgaa 322  Q
     ||| |||||||    
T  34369640 gtttggaatgaa 34369651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 490
Target Start/End: Complemental strand, 16906924 - 16906882
Alignment:
Q  448 gtggtcagatcctttattatgtttgggtatcgactgacctttg 490  Q
    |||||| |||||||| |||||||||||||| ||||||||||||    
T  16906924 gtggtcggatcctttgttatgtttgggtattgactgacctttg 16906882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 489
Target Start/End: Original strand, 13735357 - 13735450
Alignment:
Q  396 tttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgaccttt 489  Q
    |||||||| | |||||||||||  |||||||| || ||||  || | |||||||||||  | |||||| | ||||||||||| |||||||||||    
T  13735357 tttggtggttaaaagctaataataccacttttgtgtacggctcttagagatggtggtcgaaccctttactgtgtttgggtattgactgaccttt 13735450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 489
Target Start/End: Complemental strand, 24177288 - 24177191
Alignment:
Q  392 tctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgaccttt 489  Q
    |||| ||||||||| |||||||| |||||||||||| || | ||| |||| ||||||||||  ||  | || || || |||| |||||||||||||||    
T  24177288 tcttattggtggctgaaagctaacaaagccacttttatgtatggttctcagagatggtggttggactcgttgttttgcttggatatcgactgaccttt 24177191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 139 - 303
Target Start/End: Original strand, 14687219 - 14687384
Alignment:
Q  139 ttcattgcgccactttcggtacattatggcatcatatcaggtgttggatcggaatatcaggtgttgaccccctaa-tattagcgaccatttcattcagtt 237  Q
    |||||||| ||||||| ||| | || ||||||| |||||||| |||||||||||| ||||||| ||||||  | | ||||   | |||||||||||||||    
T  14687219 ttcattgcaccacttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctgacccttttactattgaggcccatttcattcagtt 14687318  T
Q  238 tactcactctacaagtcacttaaaggctcgtcaatccttccttcaacttatttgattactttgtgt 303  Q
    || |||||||||| |||||| |||||||||||| || || |||||||||||||| |||||||||||    
T  14687319 tattcactctacaggtcactcaaaggctcgtcagtcatttcttcaacttatttggttactttgtgt 14687384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 490
Target Start/End: Complemental strand, 6937073 - 6936969
Alignment:
Q  386 tttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgac 485  Q
    ||||| || ||||||||||| | ||||||||| |||| |||| || ||||| |||| |||||| ||||||| ||| |  | |||||||||||||||||||    
T  6937073 tttcattcgttttggtggctgagagctaataacgccatttttgtgtacggttctcagagatggcggtcagaccctatgatttgtttgggtatcgactgac 6936974  T
Q  486 ctttg 490  Q
    |||||    
T  6936973 ctttg 6936969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 490
Target Start/End: Complemental strand, 31706440 - 31706348
Alignment:
Q  398 tggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacctttg 490  Q
    |||||||| ||||||||||| ||||| ||| ||  |||  |||| ||||||||||| || | |||| | |||||| |||||||||||||||||    
T  31706440 tggtggctaaaagctaataatgccacgtttgtgtgcggctctcagagatggtggtcggaccttttaatttgtttgagtatcgactgacctttg 31706348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 485
Target Start/End: Complemental strand, 7014671 - 7014632
Alignment:
Q  446 tggtggtcagatcctttattatgtttgggtatcgactgac 485  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  7014671 tggtggtcagatcttttataatgtttgggtatcgactgac 7014632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 33095619 - 33095552
Alignment:
Q  419 gccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgacc 486  Q
    ||||||||| || ||||| |||| ||||||||||| || ||||| |||||| | ||||||||||||||    
T  33095619 gccacttttgtgtacggttctcaaagatggtggtcggaccctttgttatgtctaggtatcgactgacc 33095552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 478
Target Start/End: Original strand, 14320582 - 14320672
Alignment:
Q  388 tcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatc 478  Q
    ||||||||| |||||||| || ||||| || ||||  ||| || ||||| | || ||| ||||||| || |||||||||||||||||||||    
T  14320582 tcactctttgtggtggctaaaggctaagaaggccaactttatgtacggttcacaaagacggtggtcggaccctttattatgtttgggtatc 14320672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 21771 - 21684
Alignment:
Q  398 tggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactgac 485  Q
    ||||||||||||| |||||| ||||| ||| |||||||| |||| ||||||||||| || || ||||| ||||||||| | |||||||    
T  21771 tggtggcttaaagttaataatgccacgtttgtgcacggttctcagagatggtggtcggaccccttattgtgtttgggtcttgactgac 21684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 484
Target Start/End: Original strand, 64208 - 64306
Alignment:
Q  386 tttcactctttttggtggcttaaagctaataaagccacttttttgcacggtactcacagatggtggtcagatcctttattatgtttgggtatcgactga 484  Q
    ||||| ||||| ||||||||||| || ||||| ||||| ||| || ||||| |||| ||||| ||||| ||||||||| | ||||||||| | ||||||    
T  64208 tttcattctttatggtggcttaaggcaaataatgccacatttgtgtacggttctcagagatgatggtcggatcctttactttgtttgggtcttgactga 64306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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