View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17156_low_3 (Length: 443)

Name: NF17156_low_3
Description: NF17156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17156_low_3
NF17156_low_3
[»] chr2 (11 HSPs)
chr2 (49-443)||(40667296-40667702)
chr2 (256-443)||(40722347-40722531)
chr2 (229-288)||(42852633-42852691)
chr2 (96-136)||(40722627-40722667)
chr2 (241-304)||(15370238-15370300)
chr2 (229-293)||(5902477-5902538)
chr2 (242-304)||(28803445-28803506)
chr2 (218-264)||(41144267-41144313)
chr2 (241-305)||(12313087-12313150)
chr2 (230-298)||(22878180-22878247)
chr2 (218-298)||(35713258-35713336)
[»] chr8 (13 HSPs)
chr8 (233-293)||(39881647-39881706)
chr8 (230-298)||(4560584-4560651)
chr8 (230-285)||(24326113-24326167)
chr8 (223-265)||(1892177-1892219)
chr8 (223-288)||(1664444-1664508)
chr8 (236-287)||(5226603-5226653)
chr8 (230-293)||(6950404-6950466)
chr8 (230-265)||(13652298-13652333)
chr8 (230-265)||(13710941-13710976)
chr8 (223-298)||(14926903-14926977)
chr8 (230-288)||(30191072-30191129)
chr8 (229-266)||(29169888-29169925)
chr8 (231-304)||(43393687-43393759)
[»] chr5 (12 HSPs)
chr5 (242-301)||(10771806-10771864)
chr5 (242-298)||(36326102-36326157)
chr5 (231-306)||(10391425-10391499)
chr5 (230-297)||(11457180-11457246)
chr5 (244-298)||(36318870-36318923)
chr5 (229-287)||(37611147-37611204)
chr5 (229-287)||(37787877-37787934)
chr5 (230-287)||(32172735-32172791)
chr5 (229-293)||(2568739-2568802)
chr5 (229-269)||(10907459-10907499)
chr5 (239-307)||(14331457-14331524)
chr5 (237-293)||(38033953-38034008)
[»] chr4 (15 HSPs)
chr4 (229-306)||(8328032-8328108)
chr4 (230-298)||(25717675-25717742)
chr4 (230-288)||(25487488-25487545)
chr4 (222-268)||(29778877-29778923)
chr4 (249-306)||(47146045-47146101)
chr4 (232-288)||(19429793-19429848)
chr4 (225-265)||(51555723-51555763)
chr4 (223-287)||(52735183-52735246)
chr4 (234-312)||(3639075-3639152)
chr4 (229-286)||(18628486-18628542)
chr4 (224-293)||(46859994-46860062)
chr4 (249-298)||(50746076-50746124)
chr4 (232-288)||(21157852-21157907)
chr4 (229-269)||(27616253-27616293)
chr4 (224-264)||(35743345-35743385)
[»] chr3 (10 HSPs)
chr3 (241-306)||(41057248-41057312)
chr3 (232-287)||(25459562-25459616)
chr3 (229-298)||(45590732-45590800)
chr3 (233-288)||(21872226-21872280)
chr3 (242-304)||(22667497-22667558)
chr3 (242-304)||(22724136-22724197)
chr3 (233-287)||(30657371-30657424)
chr3 (229-266)||(48397658-48397695)
chr3 (229-301)||(20194951-20195022)
chr3 (233-305)||(51929826-51929897)
[»] chr6 (8 HSPs)
chr6 (230-293)||(2455892-2455954)
chr6 (231-301)||(24973945-24974014)
chr6 (231-268)||(32976061-32976098)
chr6 (243-288)||(33080509-33080553)
chr6 (218-287)||(34429646-34429714)
chr6 (229-265)||(7901784-7901820)
chr6 (249-305)||(12111068-12111123)
chr6 (229-289)||(31774458-31774517)
[»] chr1 (13 HSPs)
chr1 (231-306)||(23373226-23373300)
chr1 (225-307)||(9507308-9507389)
chr1 (234-288)||(15581340-15581393)
chr1 (237-307)||(21002244-21002313)
chr1 (240-293)||(35017674-35017726)
chr1 (230-305)||(37272508-37272582)
chr1 (229-298)||(4033938-4034006)
chr1 (241-298)||(6292585-6292641)
chr1 (231-288)||(31517671-31517727)
chr1 (229-298)||(41638229-41638297)
chr1 (232-265)||(48830058-48830091)
chr1 (106-134)||(21516246-21516274)
chr1 (242-306)||(24460314-24460377)
[»] scaffold0199 (1 HSPs)
scaffold0199 (223-288)||(6885-6949)
[»] chr7 (6 HSPs)
chr7 (229-302)||(3836600-3836672)
chr7 (231-306)||(12234802-12234876)
chr7 (224-307)||(40687830-40687910)
chr7 (229-298)||(42176501-42176569)
chr7 (224-264)||(36060076-36060116)
chr7 (229-269)||(48131418-48131458)
[»] scaffold0091 (1 HSPs)
scaffold0091 (236-287)||(6020-6070)


Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 49 - 443
Target Start/End: Original strand, 40667296 - 40667702
Alignment:
Q  49 gagatcatattattatggcttgtactctgctgcaaaataaaatataaggatatcaagttgagccctgtttggataaacaacttaatcatcaagcgcatat 148  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  40667296 gagatcatattattattgcttgtactctgctgcaaaataaagtataaggatatcaagttgagccctgtttggataaacaacttaatca---agcgcatat 40667392  T
Q  149 catgttggcgcttactcataagctttttctatatcaagataaaaataaattcaaattgtttccatat---------------ggttattgacatgtcata 233  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||    
T  40667393 catgttggcacttactaataagctttttctatatcaagataaaaataaattcaaattgtttccatataggctattctagagaggttattgacatgtcata 40667492  T
Q  234 agctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggcccttgatgttttttagtatctttgtgattg 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40667493 agctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggcccttgatgttttttagtatctttgtgattg 40667592  T
Q  334 catgcatctctttgatttcttatttccagcttgtatttgtatataaccattaagtcgttcttgtagagagggagcagtgttggggatggtggtggcgccg 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40667593 catgcatctctttgatttcttatttccagcttgtatttgtatataaccattaagtcgttcttgtagagagggagcagtgttggggatgctggtggcgccg 40667692  T
Q  434 ctgatagagt 443  Q
    ||||||||||    
T  40667693 ctgatagagt 40667702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 256 - 443
Target Start/End: Complemental strand, 40722531 - 40722347
Alignment:
Q  256 agtgcttatgccaagtagataaggtcaaataagacaatacaaataggcccttgatgttttttagtatctttgtgattgcatgcatctctttgatttctta 355  Q
    |||||||||||||| |||||||| |||||| ||| ||| ||||||||||||||||   || || ||||||||||||||| ||||||||||||||||| ||    
T  40722531 agtgcttatgccaa-tagataagctcaaattagagaatccaaataggcccttgat---ttgtaatatctttgtgattgcttgcatctctttgatttcata 40722436  T
Q  356 tttccagcttgta-tttgtatataaccattaagtcgttcttgtagagagggagcagtgttggggatggtggtggcgccgctgatagagt 443  Q
    ||| ||||||||| |||||||| || || |  |||||| ||| ||||||||||| |||||||||||| |||||| || ||||| |||||    
T  40722435 ttttcagcttgtattttgtataaaatcactgtgtcgtttttgcagagagggagccgtgttggggatgctggtggtgctgctgacagagt 40722347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 42852691 - 42852633
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataag 288  Q
    ||||| ||||||||||||| ||||||||||||||||||| || ||||||| |||||||||    
T  42852691 tcataggctcttccaaacagtctcacaagtgcttatgcc-agcagataagttcaaataag 42852633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 40722667 - 40722627
Alignment:
Q  96 ggatatcaagttgagccctgtttggataaacaacttaatca 136  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  40722667 ggatatcaacctgagccctgtttggataaacaacttaatca 40722627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 15370300 - 15370238
Alignment:
Q  241 ccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggcc 304  Q
    ||||||| |||||||| |||||||||| |||||||||| ||||||||| |||| |||| |||||    
T  15370300 ccaaacagtctcacaaatgcttatgcc-agtagataagctcaaataagtcaatccaaacaggcc 15370238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 5902538 - 5902477
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaat 293  Q
    ||||||| ||||||||||| ||||||||||| |||||||   |||||||| ||||||||| ||||    
T  5902538 tcataagttcttccaaacagtctcacaagtgtttatgcc---tagataagttcaaataagtcaat 5902477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 28803506 - 28803445
Alignment:
Q  242 caaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggcc 304  Q
    |||||| ||||||| |||||||||||  ||||||||| ||||||||| |||| ||||||||||    
T  28803506 caaacagtctcacatgtgcttatgcc-ggtagataagctcaaataagtcaatccaaataggcc 28803445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 41144267 - 41144313
Alignment:
Q  218 ttattgacatgtcataagctcttccaaacaatctcacaagtgcttat 264  Q
    |||||||||||||||||| ||||  ||||||||||| ||||||||||    
T  41144267 ttattgacatgtcataaggtcttggaaacaatctcagaagtgcttat 41144313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 12313150 - 12313087
Alignment:
Q  241 ccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccc 305  Q
    ||||||||||||||||||||||||| | ||| | |||| |||||||||  |||||||| ||||||    
T  12313150 ccaaacaatctcacaagtgcttatg-ctagtgggtaagatcaaataagctaatacaaacaggccc 12313087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 22878180 - 22878247
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    |||||| ||| ||||||| ||||||||||||||||| | ||| |||||| ||||||||| |||| ||||    
T  22878180 cataaggtctcccaaacagtctcacaagtgcttatgtc-agtggataagctcaaataagtcaatccaaa 22878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 35713258 - 35713336
Alignment:
Q  218 ttattgacatgtcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    |||| ||||||| |||||||||| | |||| ||||||||||| ||||| ||||||||| || ||||||||  |||||||||    
T  35713258 ttatggacatgttataagctctt-ctaacagtctcacaagtgtttatg-caagtagattagctcaaataaatcaatacaaa 35713336  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 39881706 - 39881647
Alignment:
Q  233 aagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaat 293  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||    
T  39881706 aagctcttccaaacaatctcacaagtgtttatgccaa-tagataagttcaaataagtcaat 39881647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 4560584 - 4560651
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    |||||| |||||||||||| |||||||||||||||| ||| |||||||| ||||||||| |||| ||||    
T  4560584 cataagttcttccaaacaacctcacaagtgcttatgtcaa-tagataagctcaaataagtcaatccaaa 4560651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 24326113 - 24326167
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaat 285  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||||||| ||||||    
T  24326113 cataagctctcccaaacagtctcacaagtgcttatgcc-agtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 1892219 - 1892177
Alignment:
Q  223 gacatgtcataagctcttccaaacaatctcacaagtgcttatg 265  Q
    ||||||||||||||||| ||||||||||||||||||| |||||    
T  1892219 gacatgtcataagctctgccaaacaatctcacaagtgtttatg 1892177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 1664444 - 1664508
Alignment:
Q  223 gacatgtcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataag 288  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||| | |||||||||  |||||||||    
T  1664444 gacatgtcataagctctcccaaacagtctcacaagtgtttatg-ctagtagataaactcaaataag 1664508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 5226603 - 5226653
Alignment:
Q  236 ctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataa 287  Q
    |||||||||||| ||||| ||||||||||| |||||||||||| ||||||||    
T  5226603 ctcttccaaacagtctcataagtgcttatg-caagtagataagatcaaataa 5226653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 6950404 - 6950466
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaat 293  Q
    |||||||||| |||||||||||||||| || ||||||| |||||||||  ||||||||| ||||    
T  6950404 cataagctctcccaaacaatctcacaaatgtttatgcc-agtagataaactcaaataagtcaat 6950466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 13652298 - 13652333
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatg 265  Q
    ||||||||||||||||||| ||||||||||||||||    
T  13652298 cataagctcttccaaacaacctcacaagtgcttatg 13652333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 13710941 - 13710976
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatg 265  Q
    ||||||||||||||||||| ||||||||||||||||    
T  13710941 cataagctcttccaaacaacctcacaagtgcttatg 13710976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 14926977 - 14926903
Alignment:
Q  223 gacatgtcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    |||| |||| |||||||  |||||| ||||||||||||||||||| |||| ||||| ||||||||| |||| ||||    
T  14926977 gacacgtcacaagctctctcaaacagtctcacaagtgcttatgcc-agtaaataagttcaaataagtcaatccaaa 14926903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 30191129 - 30191072
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataag 288  Q
    |||||||||| ||||||| ||| ||||||||||||||||| |||||||  |||||||||    
T  30191129 cataagctctcccaaacagtctaacaagtgcttatgccaa-tagataaactcaaataag 30191072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 29169925 - 29169888
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgc 266  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  29169925 tcataagctctcccaaacaatttcacaagtgcttatgc 29169888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 43393759 - 43393687
Alignment:
Q  231 ataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggcc 304  Q
    ||||||||| ||||||| ||||| ||||| || ||| ||||||||||| | ||||||| |||| ||||||||||    
T  43393759 ataagctctcccaaacagtctcaaaagtgtttttgc-aagtagataagcttaaataagtcaatccaaataggcc 43393687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 10771864 - 10771806
Alignment:
Q  242 caaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaatag 301  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||| |||| |||||||    
T  10771864 caaacaatctcacaagtgcttatgcc-agtagataagctcaaataagccaatccaaatag 10771806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 36326102 - 36326157
Alignment:
Q  242 caaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    ||||||||||||| |||||||||||||| |||||||| | |||||||||||| ||||    
T  36326102 caaacaatctcaccagtgcttatgccaa-tagataagctaaaataagacaatccaaa 36326157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 10391425 - 10391499
Alignment:
Q  231 ataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccct 306  Q
    |||| |||||||||||||||||||||||| ||||||| || ||||||| | ||||||| ||||  ||| |||||||    
T  10391425 ataaactcttccaaacaatctcacaagtgattatgcc-agcagataagcttaaataagccaatcgaaacaggccct 10391499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 11457180 - 11457246
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaa 297  Q
    |||||||||||| ||||| ||||||||||| || |||||| |||||||| ||||||||| ||| ||||    
T  11457180 cataagctcttcaaaacagtctcacaagtgtttctgccaa-tagataagctcaaataagtcaacacaa 11457246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 36318870 - 36318923
Alignment:
Q  244 aacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    ||||||||||| |||||||||||| |||||||||| | |||||||||||| ||||    
T  36318870 aacaatctcaccagtgcttatgcc-agtagataagctaaaataagacaatccaaa 36318923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 37611204 - 37611147
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataa 287  Q
    |||||||||||  ||||||||||||||||| ||| |||| |||||||||| ||||||||    
T  37611204 tcataagctctctcaaacaatctcacaagtacttgtgcc-agtagataagttcaaataa 37611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 37787934 - 37787877
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataa 287  Q
    |||||||||||  ||||||||||||||||| ||| |||| |||||||||| ||||||||    
T  37787934 tcataagctctctcaaacaatctcacaagtacttgtgcc-agtagataagttcaaataa 37787877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 32172735 - 32172791
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataa 287  Q
    |||||||||| |||||| |||||||||||||||||| | |||| ||||| ||||||||    
T  32172735 cataagctctcccaaactatctcacaagtgcttatg-ctagtatataagctcaaataa 32172791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 2568739 - 2568802
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaat 293  Q
    ||||||| ||||| ||||| |||| ||||||||||  ||| ||||||||| ||||||||||||||    
T  2568739 tcataagttcttctaaacagtctctcaagtgcttacacca-gtagataagctcaaataagacaat 2568802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 10907459 - 10907499
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaa 269  Q
    ||||||||||||||||||| ||||||||||| | |||||||    
T  10907459 tcataagctcttccaaacagtctcacaagtgttcatgccaa 10907499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 14331457 - 14331524
Alignment:
Q  239 ttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccctt 307  Q
    |||||||||||||||  |||||||||| | |||||||||| ||||||||| |||| |||| || |||||    
T  14331457 ttccaaacaatctcaagagtgcttatgac-agtagataagctcaaataagtcaatccaaacagaccctt 14331524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 38034008 - 38033953
Alignment:
Q  237 tcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaat 293  Q
    ||||||||||| ||||||| ||||||||||| |||||| ||| ||||||||| ||||    
T  38034008 tcttccaaacagtctcacaggtgcttatgcc-agtagaaaagctcaaataagtcaat 38033953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 8328108 - 8328032
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccct 306  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| |||||||| |||||||   |||| ||||||||||||    
T  8328108 tcataagctattccaaacagtctcataagtgcttatgccaa-tagataagctcaaatacatcaattcaaataggccct 8328032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 25717675 - 25717742
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    |||||||||||||||||||| ||||||||||||||| |  ||| ||||| |||||||||||||| ||||    
T  25717675 cataagctcttccaaacaatttcacaagtgcttatgtc-ggtacataagctcaaataagacaatccaaa 25717742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 25487545 - 25487488
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataag 288  Q
    |||||||||||||||||||||| |||||||||||||| || |||||||  |||||||||    
T  25487545 cataagctcttccaaacaatcttacaagtgcttatgctaa-tagataaactcaaataag 25487488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 29778877 - 29778923
Alignment:
Q  222 tgacatgtcataagctcttccaaacaatctcacaagtgcttatgcca 268  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  29778877 tgacatgtcataagcttttctaaacaatctcacaagtgtttatgcca 29778923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 47146045 - 47146101
Alignment:
Q  249 tctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccct 306  Q
    ||||||||||||||||||||| || ||||| ||||||||| |||| ||||||||||||    
T  47146045 tctcacaagtgcttatgccaa-tatataagttcaaataagtcaatccaaataggccct 47146101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 19429793 - 19429848
Alignment:
Q  232 taagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataag 288  Q
    |||| ||||||||||||||||||| ||||||||| | |||||||||| |||||||||    
T  19429793 taagatcttccaaacaatctcacatgtgcttatg-cgagtagataagttcaaataag 19429848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 51555763 - 51555723
Alignment:
Q  225 catgtcataagctcttccaaacaatctcacaagtgcttatg 265  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  51555763 catgtcataagctcttctaaacaatctcataagtgcttatg 51555723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 52735183 - 52735246
Alignment:
Q  223 gacatgtcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataa 287  Q
    ||||||||||||||||| || |||| ||||||||| | ||||| |||||||||||||||| ||||    
T  52735183 gacatgtcataagctctccctaacagtctcacaagcggttatg-caagtagataaggtcatataa 52735246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 3639152 - 3639075
Alignment:
Q  234 agctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggcccttgatgt 312  Q
    |||||||||||| ||||||||| ||||||||| |  ||||||||| |||||||||  ||| |||||| |||||| ||||    
T  3639152 agctcttccaaataatctcacaggtgcttatgtc-ggtagataagctcaaataagcaaatccaaatatgcccttaatgt 3639075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 18628542 - 18628486
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaata 286  Q
    ||||||||||| ||||||| ||||||||||| ||||| | |||||||||| |||||||    
T  18628542 tcataagctctcccaaacagtctcacaagtgtttatgtc-agtagataagctcaaata 18628486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 46859994 - 46860062
Alignment:
Q  224 acatgtcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaat 293  Q
    ||||||||||||||||  |||||| | |||||||||||||||  || |||||||| ||||||||| ||||    
T  46859994 acatgtcataagctctctcaaacagtttcacaagtgcttatgtgaa-tagataagttcaaataagtcaat 46860062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 50746076 - 50746124
Alignment:
Q  249 tctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    |||||||||||||||||| ||||||||||  ||||||||| |||||||||    
T  50746076 tctcacaagtgcttatgc-aagtagataaactcaaataagtcaatacaaa 50746124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 21157852 - 21157907
Alignment:
Q  232 taagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataag 288  Q
    |||||||||||||||| ||| ||||||||||||| | ||||||| || |||||||||    
T  21157852 taagctcttccaaacagtcttacaagtgcttatgtc-agtagatgagctcaaataag 21157907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 27616293 - 27616253
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaa 269  Q
    ||||||||||||| |||||| ||||||| ||||||||||||    
T  27616293 tcataagctcttcaaaacaacctcacaactgcttatgccaa 27616253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 35743345 - 35743385
Alignment:
Q  224 acatgtcataagctcttccaaacaatctcacaagtgcttat 264  Q
    |||||||||||||||||| ||||| |||||||| |||||||    
T  35743345 acatgtcataagctcttctaaacagtctcacaaatgcttat 35743385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 41057248 - 41057312
Alignment:
Q  241 ccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccct 306  Q
    ||||||| |||||||||||||||||| | ||||||||| ||||||||| |||| ||||||||||||    
T  41057248 ccaaacagtctcacaagtgcttatgc-atgtagataagctcaaataagccaattcaaataggccct 41057312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 25459616 - 25459562
Alignment:
Q  232 taagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataa 287  Q
    |||||||||||||||||||||||||||||||||| | ||| |||||| ||||||||    
T  25459616 taagctcttccaaacaatctcacaagtgcttatg-ctagttgataagctcaaataa 25459562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 45590732 - 45590800
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    ||||||||||| ||||||| ||||||||||||||||| | |||||||||| ||||| ||| |||| ||||    
T  45590732 tcataagctctcccaaacagtctcacaagtgcttatg-ctagtagataagttcaaaaaagtcaattcaaa 45590800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 21872280 - 21872226
Alignment:
Q  233 aagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataag 288  Q
    ||||| ||||||||| ||||||||||||||||| | |||||||||| |||||||||    
T  21872280 aagcttttccaaacagtctcacaagtgcttatgtc-agtagataagatcaaataag 21872226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 22667497 - 22667558
Alignment:
Q  242 caaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggcc 304  Q
    |||||| ||||||||||||||||| | |||||||||| ||||||||| ||||  |||||||||    
T  22667497 caaacagtctcacaagtgcttatgtc-agtagataagctcaaataagccaatcgaaataggcc 22667558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 22724136 - 22724197
Alignment:
Q  242 caaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggcc 304  Q
    |||||| ||||||||||||||||| | |||||||||| ||||||||| ||||  |||||||||    
T  22724136 caaacagtctcacaagtgcttatgtc-agtagataagctcaaataagccaatcgaaataggcc 22724197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 30657371 - 30657424
Alignment:
Q  233 aagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataa 287  Q
    ||||||||||||||||||||| ||||||||||| | |||||||||  ||||||||    
T  30657371 aagctcttccaaacaatctcaaaagtgcttatgtc-agtagataaactcaaataa 30657424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 48397658 - 48397695
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgc 266  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  48397658 tcattagctcttccaaacaatctcacaaatgcttatgc 48397695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 20195022 - 20194951
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaatag 301  Q
    |||||||||||  |||||| |||||||| |||||||| |||| ||||||| ||||||||  |||| |||||||    
T  20195022 tcataagctctcacaaacagtctcacaactgcttatg-caagaagataagttcaaataaatcaatccaaatag 20194951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 51929826 - 51929897
Alignment:
Q  233 aagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccc 305  Q
    ||||||||||||| |  |||||||||| |||||| || |||||||| ||||||||| |||| |||| ||||||    
T  51929826 aagctcttccaaatagcctcacaagtgtttatgctaa-tagataagctcaaataagtcaatccaaacaggccc 51929897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 2455892 - 2455954
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaat 293  Q
    |||||||||||| |||||||||| ||||||||||||||  ||||||||| ||||||||| ||||    
T  2455892 cataagctcttctaaacaatctcgcaagtgcttatgcc-ggtagataagctcaaataagtcaat 2455954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 24974014 - 24973945
Alignment:
Q  231 ataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaatag 301  Q
    ||||||||| ||||||||||| ||||||||||||| | || ||||||| |||||||||  ||| |||||||    
T  24974014 ataagctctaccaaacaatcttacaagtgcttatgtc-agcagataagttcaaataagctaatccaaatag 24973945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 32976061 - 32976098
Alignment:
Q  231 ataagctcttccaaacaatctcacaagtgcttatgcca 268  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  32976061 ataagctcttccaaacagtctcacaagtacttatgcca 32976098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 33080553 - 33080509
Alignment:
Q  243 aaacaatctcacaagtgcttatgccaagtagataaggtcaaataag 288  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||    
T  33080553 aaacaatctcacaagtgcttatgcc-agtaaataagctcaaataag 33080509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 34429714 - 34429646
Alignment:
Q  218 ttattgacatgtcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataa 287  Q
    |||| ||| ||||||||||| ||||||||||| || |||||| ||||| | |||||||||| ||||||||    
T  34429714 ttatggacgtgtcataagcttttccaaacaatatctcaagtgtttatg-ctagtagataagctcaaataa 34429646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 7901820 - 7901784
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatg 265  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  7901820 tcataagctcttccaaacagtctcacaagggcttatg 7901784  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 12111068 - 12111123
Alignment:
Q  249 tctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccc 305  Q
    |||| ||||||||||||| | ||||||||| ||||||||| |||| |||||||||||    
T  12111068 tctcgcaagtgcttatgcta-gtagataagctcaaataagtcaatccaaataggccc 12111123  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 31774458 - 31774517
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataaga 289  Q
    |||| |||||||||||||| ||||| |||||||||||||  ||||||||  ||||||||||    
T  31774458 tcatgagctcttccaaacagtctcataagtgcttatgcc-ggtagataaactcaaataaga 31774517  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 23373300 - 23373226
Alignment:
Q  231 ataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccct 306  Q
    ||||||||| ||||||||||||||||||||||||  | |||||| ||| ||||||||| |||| |||| |||||||    
T  23373300 ataagctctcccaaacaatctcacaagtgcttatatc-agtagacaagttcaaataagtcaattcaaacaggccct 23373226  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 9507308 - 9507389
Alignment:
Q  225 catgtcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccctt 307  Q
    ||||||||||||||| ||||||| |||||||| ||| |||| | |||||||||| |||||||||  ||| |||||| ||||||    
T  9507308 catgtcataagctctcccaaacagtctcacaaatgcctatg-ctagtagataagctcaaataagcaaattcaaataagccctt 9507389  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 15581340 - 15581393
Alignment:
Q  234 agctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataag 288  Q
    |||||||||||||||||||||||||||||||| | |||||||||| | |||||||    
T  15581340 agctcttccaaacaatctcacaagtgcttatgtc-agtagataagctaaaataag 15581393  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 21002244 - 21002313
Alignment:
Q  237 tcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccctt 307  Q
    ||||||||||| |||||||||| |||||| |||||||||||| ||||||||| |||| |||| | ||||||    
T  21002244 tcttccaaacagtctcacaagttcttatg-caagtagataagctcaaataagccaatccaaacaagccctt 21002313  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 35017674 - 35017726
Alignment:
Q  240 tccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaat 293  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||    
T  35017674 tccaaacaatctcacaagtgtttatgccaa-tagataagctcaaataagccaat 35017726  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 37272582 - 37272508
Alignment:
Q  230 cataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccc 305  Q
    ||||||||||  |||||||||||||||||||||| ||| |||||||||| ||||| ||  || |||||| ||||||    
T  37272582 cataagctctctcaaacaatctcacaagtgcttaagcc-agtagataagctcaaacaattcattacaaacaggccc 37272508  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 4034006 - 4033938
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    |||||||||||  |||||||||||||||||| ||||||| |||||| ||| |||||| || |||| ||||    
T  4034006 tcataagctctctcaaacaatctcacaagtgtttatgcc-agtagacaagttcaaatgagtcaatgcaaa 4033938  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 6292585 - 6292641
Alignment:
Q  241 ccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    ||||||||||||| ||||||||||| | |||||||||| ||||||||| |||| ||||    
T  6292585 ccaaacaatctcaaaagtgcttatgtc-agtagataagctcaaataagtcaatccaaa 6292641  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 31517727 - 31517671
Alignment:
Q  231 ataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataag 288  Q
    ||||| ||| ||||||| ||||||||||||||||||| |||| ||||| |||||||||    
T  31517727 ataagttctcccaaacagtctcacaagtgcttatgcc-agtaaataagctcaaataag 31517671  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 41638297 - 41638229
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    |||||| |||| ||||||| |||||||| |||||||||| |||||||| | |||| ||||||||| ||||    
T  41638297 tcataatctctcccaaacagtctcacaaatgcttatgcc-agtagataggctcaattaagacaatccaaa 41638229  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 48830091 - 48830058
Alignment:
Q  232 taagctcttccaaacaatctcacaagtgcttatg 265  Q
    |||||||||||||||| |||||||||||||||||    
T  48830091 taagctcttccaaacagtctcacaagtgcttatg 48830058  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 21516246 - 21516274
Alignment:
Q  106 ttgagccctgtttggataaacaacttaat 134  Q
    |||||||||||||||||||||||||||||    
T  21516246 ttgagccctgtttggataaacaacttaat 21516274  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 24460377 - 24460314
Alignment:
Q  242 caaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccct 306  Q
    |||||| ||||||||||||| ||| | |||||||||| ||||||||| |||| |||| |||||||    
T  24460377 caaacagtctcacaagtgctcatgtc-agtagataagttcaaataagtcaatccaaacaggccct 24460314  T

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Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 6885 - 6949
Alignment:
Q  223 gacatgtcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataag 288  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||| | |||||||||  |||||||||    
T  6885 gacatgtcataagctctcccaaacagtctcacaagtgtttatg-ctagtagataaactcaaataag 6949  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 3836672 - 3836600
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaatagg 302  Q
    ||||||| ||| ||||||| | ||||||||||||| ||| |||||||||| ||||||||| |||| ||||||||    
T  3836672 tcataagttctcccaaacagtttcacaagtgcttaagcc-agtagataagctcaaataaggcaatccaaatagg 3836600  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 12234876 - 12234802
Alignment:
Q  231 ataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccct 306  Q
    ||||||| |||||| || ||||||| ||||| |||||| ||||||||| |||| |||| |||| ||||||||||||    
T  12234876 ataagctattccaagcagtctcacacgtgctaatgcca-gtagataagctcaactaagtcaatccaaataggccct 12234802  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 40687830 - 40687910
Alignment:
Q  224 acatgtcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaataggccctt 307  Q
    |||||||||||||||| ||||||  | |||||| ||| |||||   ||||||||| |||||||||  ||| |||||||||||||    
T  40687830 acatgtcataagctctcccaaactgtgtcacaaatgcctatgc---gtagataagctcaaataagcaaattcaaataggccctt 40687910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 42176501 - 42176569
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataagacaatacaaa 298  Q
    ||||||||||| | ||||| |||  ||||| ||||||||||| |||||||||||| |||| |||||||||    
T  42176501 tcataagctctccgaaacagtcttgcaagttcttatgccaag-agataaggtcaattaagtcaatacaaa 42176569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 36060076 - 36060116
Alignment:
Q  224 acatgtcataagctcttccaaacaatctcacaagtgcttat 264  Q
    ||||||||||||| || ||||||||||||||||| ||||||    
T  36060076 acatgtcataagccctcccaaacaatctcacaagggcttat 36060116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 48131418 - 48131458
Alignment:
Q  229 tcataagctcttccaaacaatctcacaagtgcttatgccaa 269  Q
    ||||||| ||||||||||| ||||| |||||||||||||||    
T  48131418 tcataagttcttccaaacagtctcataagtgcttatgccaa 48131458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 6020 - 6070
Alignment:
Q  236 ctcttccaaacaatctcacaagtgcttatgccaagtagataaggtcaaataa 287  Q
    |||||||||||| ||||| ||||||||||| |||||||||||| ||||||||    
T  6020 ctcttccaaacagtctcataagtgcttatg-caagtagataagatcaaataa 6070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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