View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17156_low_5 (Length: 209)
Name: NF17156_low_5
Description: NF17156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17156_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 53929814 - 53930008
Alignment:
| Q |
1 |
tcatggcatagaagttggcttgaggacaccttaaaaacacctccaacccaaaatttacaagttcttccttcgccatatatatctcttccacttatgagca |
100 |
Q |
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| T |
53929814 |
tcatggcatagaagttggcttgaggacaccttaaaagaacctccagccgaaaatttacaagttcttccttcgccatatatatctcttccacttatgagca |
53929913 |
T |
|
| Q |
101 |
ttgtcaaaattgctaggtatgtctctttcagagccttcctctcaaaattcaaccaatttcttcctaacaatcaataacctttcaagattgatatt |
195 |
Q |
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|||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53929914 |
ttgtaaaaattgctaggtatgtgtctttcagagccatcctctcaaaattcaaccaatttcttcataacaatcaataacctttcaagattgatatt |
53930008 |
T |
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