View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17157_high_11 (Length: 334)

Name: NF17157_high_11
Description: NF17157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17157_high_11
NF17157_high_11
[»] chr3 (12 HSPs)
chr3 (26-334)||(23235431-23235739)
chr3 (30-334)||(23231543-23231847)
chr3 (191-330)||(23196200-23196339)
chr3 (160-269)||(23240162-23240271)
chr3 (218-333)||(23226400-23226515)
chr3 (245-323)||(37754091-37754169)
chr3 (43-120)||(23196401-23196478)
chr3 (204-311)||(7398866-7398973)
chr3 (260-323)||(37758491-37758554)
chr3 (28-90)||(23240057-23240119)
chr3 (212-309)||(7443696-7443793)
chr3 (195-300)||(9609046-9609151)
[»] chr6 (4 HSPs)
chr6 (194-333)||(19118241-19118380)
chr6 (194-333)||(19125550-19125689)
chr6 (227-294)||(17367595-17367662)
chr6 (243-315)||(17361267-17361339)
[»] chr2 (1 HSPs)
chr2 (202-306)||(33037401-33037505)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 26 - 334
Target Start/End: Original strand, 23235431 - 23235739
Alignment:
Q  26 atactgtatagtgggtaaaaaggatagtgtagttgggtcggtttaaccgttacagaattaaaaatggagcgactttggtgaaaaatggagcgaagccggt 125  Q
    |||||||||||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||    
T  23235431 atactgtatagtgggtcaaaaagatagtgtagttgggtgggtttaaccgttacagagttaaaaatggagcgacttcggtgaaaaatggagtgaagccggt 23235530  T
Q  126 aaaagactagtgttggcttcctattaatagtatcatcaaagtaggttaagacgaggttgccgctggtggttgataagcgaaggtgtttcttagcgaaatt 225  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  23235531 aaaagactagtgttggcttcctatcaatagtatcatcaaagtaggttaagatgaggttgcggctggtggttgataagcgaaggtgtttcttagcgaaatt 23235630  T
Q  226 gggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccaccaattcgagc 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23235631 gggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccaccaattcgagc 23235730  T
Q  326 gggagatcc 334  Q
    |||||||||    
T  23235731 gggagatcc 23235739  T

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Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 334
Target Start/End: Original strand, 23231543 - 23231847
Alignment:
Q  30 tgtatagtgggtaaaaaggatagtgtagttgggtcggtttaaccgttacagaattaaaaatggagcgactttggtgaaaaatggagcgaagccggtaaaa 129  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||| |||||||||||||||    |||||||||||||| |||||||||||||    
T  23231543 tgtatagtggatcaaaaggatagtgtagttgggtcggtttaactgttacagagttaaaaatggagcgaagcgggtgaaaaatggagtgaagccggtaaaa 23231642  T
Q  130 gactagtgttggcttcctattaatagtatcatcaaagtaggttaagacgaggttgccgctggtggttgataagcgaaggtgtttcttagcgaaattggga 229  Q
    || ||| |||| |||| ||| |  ||||||||||||||||||||||| |||||||| || |||| |||||||||||||||||||||| ||||||||||||    
T  23231643 gattagcgttgacttcatatcataagtatcatcaaagtaggttaagatgaggttgcggcgggtgattgataagcgaaggtgtttctttgcgaaattggga 23231742  T
Q  230 tcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccaccaattcgagcggga 329  Q
    ||||| || ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23231743 tcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccaccaattcgagcggga 23231842  T
Q  330 gatcc 334  Q
    |||||    
T  23231843 gatcc 23231847  T

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Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 191 - 330
Target Start/End: Complemental strand, 23196339 - 23196200
Alignment:
Q  191 gtggttgataagcgaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacag 290  Q
    |||||||||||||||||||||||||||||||| || ||||||||||| ||| |||||||| ||||||| |||||||| ||||||||||||| | ||||||    
T  23196339 gtggttgataagcgaaggtgtttcttagcgaactttggatcagaaataagggtattgaagaacttactgaggcatcgtagttgtaggaggaacatgacag 23196240  T
Q  291 gaagtctgcatagaatctctgccaccaattcgagcgggag 330  Q
    | || |||||||||||||||||||| | ||||| ||||||    
T  23196239 ggagcctgcatagaatctctgccactagttcgaacgggag 23196200  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 23240162 - 23240271
Alignment:
Q  160 atcaaagtaggttaagacgaggttgccgctggtggttgataagcgaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttacta 259  Q
    ||||||||||||||||| ||||||||  | |||||||||||||||||||||||||||| ||||||  ||||||||||| ||| ||||||||||||||||     
T  23240162 atcaaagtaggttaagatgaggttgcttcgggtggttgataagcgaaggtgtttcttaacgaaataaggatcagaaattagggtattgaaggacttactg 23240261  T
Q  260 aggcatcgaa 269  Q
    ||||||||||    
T  23240262 aggcatcgaa 23240271  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 333
Target Start/End: Original strand, 23226400 - 23226515
Alignment:
Q  218 gcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccacca 317  Q
    |||||| ||||||||||||| ||| |||| ||||||| ||| || ||||||||||||| ||||| |||||| || || || |||||||||||||  | ||    
T  23226400 gcgaaagtgggatcagaaattaggatattcaaggactaactgagacatcgaagttgtaagaggatcttgacggggagcctacatagaatctctgagatca 23226499  T
Q  318 attcgagcgggagatc 333  Q
    ||||||| ||||||||    
T  23226500 attcgagtgggagatc 23226515  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 37754091 - 37754169
Alignment:
Q  245 ttgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccaccaattcga 323  Q
    |||||||||||||  ||||| || ||||||| ||| | ||||||||| |||||||||||||| ||||| ||||||||||    
T  37754091 ttgaaggacttacagaggcaccggagttgtaagagtaacttgacagggagtctgcatagaatttctgcgaccaattcga 37754169  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 23196478 - 23196401
Alignment:
Q  43 aaaaggatagtgtagttgggtcggtttaaccgttacagaattaaaaatggagcgactttggtgaaaaatggagcgaag 120  Q
    |||||||||| ||| |||||| |||||||| |||||||| |||||||||||   || |||||||||| ||||| ||||    
T  23196478 aaaaggatagcgtatttgggtaggtttaacggttacagagttaaaaatggaatcacattggtgaaaagtggagtgaag 23196401  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 7398866 - 7398973
Alignment:
Q  204 gaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcatag 303  Q
    ||||||||||||| |  || |||| |||||| || ||| |||||||| ||||||  |||||||||||||| ||||| ||||| || || || || || ||    
T  7398866 gaaggtgtttctttgtaaatttggaatcagagataagggtattgaagaacttacagaggcatcgaagttgaaggagaagcttcactgggagcctacacag 7398965  T
Q  304 aatctctg 311  Q
    ||||||||    
T  7398966 aatctctg 7398973  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 37758491 - 37758554
Alignment:
Q  260 aggcatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccaccaattcga 323  Q
    |||||||| ||||||| ||| | |||||||||||| || |||||||| ||||||||||| ||||    
T  37758491 aggcatcggagttgtaagagtaacttgacaggaagcctacatagaatttctgccaccaaatcga 37758554  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 23240057 - 23240119
Alignment:
Q  28 actgtatagtgggtaaaaaggatagtgtagttgggtcggtttaaccgttacagaattaaaaat 90  Q
    |||||||| ||||| |||||||||||| |||||| | |||||||| ||| |||| ||||||||    
T  23240057 actgtatattgggtcaaaaggatagtgcagttggatgggtttaactgttgcagagttaaaaat 23240119  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 309
Target Start/End: Original strand, 7443696 - 7443793
Alignment:
Q  212 ttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctc 309  Q
    ||||| |||||||||||||||||||| |    ||||||| ||||||  ||||| |||||||||| ||| |  || |||||||| ||||| ||||||||    
T  7443696 ttcttggcgaaattgggatcagaaattaaagaattgaagaacttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctc 7443793  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 9609046 - 9609151
Alignment:
Q  195 ttgataagcgaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaag 294  Q
    ||||||| |||||||| ||||| ||||| || ||||| ||||| |||| ||||||||| || | |||||| ||||| || |  || ||||| || |||||    
T  9609046 ttgataaacgaaggtgcttcttggcgaatttcggatctgaaattaggtaattgaaggatttgccaaggcaccgaagctgcactagtagctttaccggaag 9609145  T
Q  295 tctgca 300  Q
    ||||||    
T  9609146 tctgca 9609151  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 194 - 333
Target Start/End: Complemental strand, 19118380 - 19118241
Alignment:
Q  194 gttgataagcgaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaa 293  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||| ||| |||||| |||||||||  | ||||||||||||| ||||||||| || ||||    
T  19118380 gttgataggcgaaggtgtttctttgcgaatttgggatcggaaattagggtattgagggacttactttgacatcgaagttgtatgaggagcttcacgggaa 19118281  T
Q  294 gtctgcatagaatctctgccaccaattcgagcgggagatc 333  Q
    | ||||| |||||||||||||||| ||||| |||||||||    
T  19118280 gcctgcacagaatctctgccaccagttcgaacgggagatc 19118241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 333
Target Start/End: Complemental strand, 19125689 - 19125550
Alignment:
Q  194 gttgataagcgaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaa 293  Q
    ||||||| |||||||||||||||  ||||  ||||||||||||| ||| |||||| |||||||||  | ||||||||||||| ||||||||| || ||||    
T  19125689 gttgataggcgaaggtgtttcttcacgaagatgggatcagaaattagggtattgagggacttactctgacatcgaagttgtacgaggagcttcacgggaa 19125590  T
Q  294 gtctgcatagaatctctgccaccaattcgagcgggagatc 333  Q
    | ||||| ||||||||||| |||| |||||  ||||||||    
T  19125589 gcctgcacagaatctctgcgaccagttcgaatgggagatc 19125550  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 17367662 - 17367595
Alignment:
Q  227 ggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaag 294  Q
    ||||||||||| |||| |||||| |||||||| |  ||||||||||||| |||||||||||| |||||    
T  17367662 ggatcagaaattaggtcattgaaagacttacttaaacatcgaagttgtatgaggagcttgacgggaag 17367595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 17361339 - 17361267
Alignment:
Q  243 tattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccac 315  Q
    |||| |||||||||||  ||||||||||||| | |||||||||||| ||||| || || ||||| ||| ||||    
T  17361339 tattaaaggacttactttggcatcgaagttgaaagaggagcttgactggaagcctacacagaatttcttccac 17361267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 306
Target Start/End: Complemental strand, 33037505 - 33037401
Alignment:
Q  202 gcgaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcat 301  Q
    |||||| |||||||||||||| || ||||||||||| |    |||||  |||||||  || ||||||||||| | |||||| || || ||||||||||||    
T  33037505 gcgaagatgtttcttagcgaatttaggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagttttaccggaagtctgcat 33037406  T
Q  302 agaat 306  Q
    |||||    
T  33037405 agaat 33037401  T

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