View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17157_high_13 (Length: 321)
Name: NF17157_high_13
Description: NF17157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17157_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 24017190 - 24016878
Alignment:
| Q |
1 |
tattgatccccttcgacctcatcctcggtgcacccaaaactcaccatcctgtgtttataagcctgaacttcacacgtaagcgactgaattatctgttctc |
100 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |||| |
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| T |
24017190 |
tattgatcaccttcgacctcatcctcggtgtacccaaaactcatcatcctgtgtttataagcctgaacttcgcatgtaagcgactgaattatctgctctc |
24017091 |
T |
|
| Q |
101 |
tcttgtacaacaaatcttccaaagacataagttcctcctgatcatgcgtcattttctcctctgcaaaacgcttaaactgacgagcttccatttgaacttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24017090 |
tcttgtacaacaaatcttccaaagacataagttcctcctgatcatgcgtcattttctcctctgcaaaacgcttaaactgacgagcttccatttgaacttc |
24016991 |
T |
|
| Q |
201 |
cgccttttccctctgcaacctcaaaatcatcgacattgcctcatttgcagctgtggacgcagaatttctttcctcctccaactcctcattcaaatcctga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
24016990 |
cgccttttccctctgcaacctcaaaatcatcgacattgcctcattcgcagctgtggacgcagaatttctctcttcctccaactcctcattcaaatcctga |
24016891 |
T |
|
| Q |
301 |
atcgttctctgct |
313 |
Q |
| |
|
||||||||||||| |
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| T |
24016890 |
atcgttctctgct |
24016878 |
T |
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