View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17157_high_4 (Length: 429)
Name: NF17157_high_4
Description: NF17157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17157_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 14776526 - 14776105
Alignment:
| Q |
1 |
ggtccaaaaatttgcttgcgtgatccctcacattctgaccgtcgggccctgctgccggcattgactgtaaaaatacatgagcaggatggccactgacttt |
100 |
Q |
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| T |
14776526 |
ggtccaaaaatttgcttgcgtgatccctcacattctgaccgtcgggccctgctgccggcattgactgtaaaaatacatgagcaggatggccactgacttt |
14776427 |
T |
|
| Q |
101 |
catcagctcacaacaaaaccccatatcatactgtgattgtgcgtctgtacaacagctgagaagcaaagtgtaagtctgcaaagaaggacttaggccaagt |
200 |
Q |
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| T |
14776426 |
catcagctcacaacaaaatcccatatcatactgtgattgtgcgtctgtacagcagctgagaagcaaagtgtaagtctgcaaagaaggacttaggccaagt |
14776327 |
T |
|
| Q |
201 |
gctaccatgctttggagaagattatacgcatctggcaatcgatgcaccctaagaaatgcactgaggagagaattgcaagttggtacatttggaagcaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14776326 |
gctaccatgctttggagaagattatacgcatctggcaatcgatgcaccctaagaaatgcactgaggagagaattgcaagttggtacatttggaagcaaac |
14776227 |
T |
|
| Q |
301 |
ctgcactgagcattgccccgtaccattcccaagccttctcaacattaccagcctttccccataggtctaccagaagaccataaacaggttcgtctggaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14776226 |
ctgcactgagcattgccccgtaccattcccaagccttctcaacattaccagcctttccccataggtctaccagaagaccataaacaggttcgtctggaac |
14776127 |
T |
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| Q |
401 |
ccaattcctctgcttcatctca |
422 |
Q |
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| T |
14776126 |
ccaattcctctgcttcatctca |
14776105 |
T |
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