View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17157_high_6 (Length: 362)
Name: NF17157_high_6
Description: NF17157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17157_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 33346066 - 33345710
Alignment:
| Q |
1 |
gtgatggcacatgaattaaaacttgaaagtggagaaaccagatgggttatagataccattgttggcaaagaagatggactgggagttgaaaacttgagtg |
100 |
Q |
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| T |
33346066 |
gtgatggcacatgaattaaaacttgaaagtggagaaaccagatgggttatagataccattgttggcaaagaagatggactgggagttgaaaacttgagtg |
33345967 |
T |
|
| Q |
101 |
gtagtggggccattgctggtgcctattcaagggcatacaaggaaacctttacattgacatatgttactggtaggactgttggaattggtgcttatcttgc |
200 |
Q |
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| T |
33345966 |
gtagtggggccattgctggtgcctattcaagggcatacaaggaaacctttacattgacatatgttaccggtaggactgttggaattggtgcttatcttgc |
33345867 |
T |
|
| Q |
201 |
taggcttgggatgaggtgcatacagaggcttgatcagcctataattcttaccgggttttcagcattaaacaaacttcttggtagggaggtgtacagctct |
300 |
Q |
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| T |
33345866 |
taggcttgggatgaggtgcatacagaggcttgatcagcctataattcttaccgggttttcagcattaaacaaacttcttggtagggaggtgtacagctct |
33345767 |
T |
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| Q |
301 |
cacatgcaacttggtggaccgaaaatcatggcaacaaatggagtcgttcatctcact |
357 |
Q |
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| T |
33345766 |
cacatgcaacttggtggaccgaaaatcatggcaacaaatggagtcgttcatctcact |
33345710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 33320944 - 33320592
Alignment:
| Q |
1 |
gtgatggcacatgaattaaaacttgaaagtggagaaaccagatgggttatagataccattgttggcaaagaagatggactgggagttgaaaacttgagtg |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| | |||||| ||||||||||||||||||| |
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| T |
33320944 |
gtgatggcacatgaattaaagattgaaagtggagaaaccagatgggttatagataccattctcggcaaagacgttggactaggagttgaaaacttgagtg |
33320845 |
T |
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| Q |
101 |
gtagtggggccattgctggtgcctattcaagggcatacaaggaaacctttacattgacatatgttactggtaggactgttggaattggtgcttatcttgc |
200 |
Q |
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| |||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| || |||| |||||||||||||||||||||||||| |
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| T |
33320844 |
gcagtggggccattgccggtgcctattcaagggcatacaaggaaacctttacactaacatatgtgaccggtacaactgttggaattggtgcttatcttgc |
33320745 |
T |
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| Q |
201 |
taggcttgggatgaggtgcatacagaggcttgatcagcctataattcttaccgggttttcagcattaaacaaacttcttggtagggaggtgtacagctct |
300 |
Q |
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||||| |||||||| |||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
33320744 |
aaggctggggatgagatgcatacagaggtttgatcagcctatgattcttaccggtttttcagcattaaacaaactccttggtagggaagtgtacagctct |
33320645 |
T |
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| Q |
301 |
cacatgcaacttggtggaccgaaaatcatggcaacaaatggagtcgttcatct |
353 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||| |||||||| |
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| T |
33320644 |
cacatgcaacttggtggatctaaaatcatggcaacaaatggagttgttcatct |
33320592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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