View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17158_high_1 (Length: 924)
Name: NF17158_high_1
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 821; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 821; E-Value: 0
Query Start/End: Original strand, 1 - 908
Target Start/End: Original strand, 32947195 - 32948092
Alignment:
| Q |
1 |
tagcaccctaatggtcggtcaatgagccggattaatagagttttggtgtcggagaaatggaggcatttttggggggatgtgaatctttgggtccttccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32947195 |
tagcaccctaatggtcggtcaatgagccggattgatagagttttggtgtcgaaggaatggaggcatttttggggggatgtgaatctttgggtccttccat |
32947294 |
T |
|
| Q |
101 |
gggacgtttctgatcattgtccttttctcctaaaagtggaaggttgggattggggcccaaaaccgttctgttttaataatttttggttggataatggtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32947295 |
gggacgtttctgatcattgtccttttctcctaaaagtgaaaggttgggattggggcccaaaaccgttctgttttaataatttttggttggataatggtga |
32947394 |
T |
|
| Q |
201 |
tattaagaaggtggtggaagaagttttgaggtcgagtaatttaagtgggtggatggggtatgttttgacttacaaactcaattcttaaagggaaattgag |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32947395 |
tattaagaagatggtggaagaagttttgaggtcgagtaatttaagtgggtggatggggtatcttttgacggacaaactcaattcttaaagggaaattgag |
32947494 |
T |
|
| Q |
301 |
ggagtggaatatagtggaatatgggggtttggatgaccgggtgaagaggttgacggaggagatagtggtgttggatgtgtggggggaggttggaggttta |
400 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32947495 |
ggagtg----------gaatatgggggtttggatgaccgggtgaagaggttgacggaggagatagtggtgttggatgtgtggggggaggttggaggttta |
32947584 |
T |
|
| Q |
401 |
aatgaagaggaagttcaacttaggaagcttaagtttagttcactttggaggttactaaaggcaaaagattctttattggttcaaagatcacgatcaaggt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32947585 |
aatgaagaggaagttcaacttaggaagcttaagtttagttcactttggaggttactaaaggcaaaagattctttattggttcaaagattacgatcaaggt |
32947684 |
T |
|
| Q |
501 |
ggctaaaggagggggctgataatacaaagttcgtccacaattgtattaaatctagagtaaatgggaattgatagtgcggttgggttttcctaggaagtgg |
600 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32947685 |
ggctaaaggagggggatgataatactaagttcgtccacaattgtattaaatctagagtaaatgggaattgatagtgcggttgggttttcctaggaagtgg |
32947784 |
T |
|
| Q |
601 |
gtggcttggatgaaagcgtgtgtgtgtggtggaaatatgttcgttcttgtaaatggaatcccaatggaagaaatttgcattcaaacagaccttaaacaag |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32947785 |
gtggcttggatgaaagcgtgtgtgtgtggtggaaatatgttcgttcttgtaaatggaatcccaatggaagaaatttgcattcaaacagaccttaaacaag |
32947884 |
T |
|
| Q |
701 |
gagatcccctagctccgtttttatttccccaagtggcggaaggcttcagtggcttgatgaggaatgcgggtcgtttggagttgttcaagggttttggttt |
800 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32947885 |
gagatcccctagctccgtttttatttctccaagtggcggaaggcttcagtggcttgatgaggaatgcgggtcgtttggagttgttcaagggttttggttt |
32947984 |
T |
|
| Q |
801 |
catgagagatggtatggtaatctctcacctacaatatatggatgatactatttgtataggcgtggcaactgtggactttggactttgaaagcaatgttga |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32947985 |
catgagagatggtatggtaatctctcacctacaatatgtggatgatactatttgtataggcgtggcaactgtggactttggactttgaaagcaatgttga |
32948084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 595 - 769
Target Start/End: Complemental strand, 17992092 - 17991918
Alignment:
| Q |
595 |
aagtgggtggcttggatgaaagcgtgtgtgtgtggtggaaatatgttcgttcttgtaaatggaatcccaatggaagaaatttgcattcaaacagacctta |
694 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | |||| | ||||| | ||||||| ||||| | |||| ||| || ||||||||||| || ||||| |
|
|
| T |
17992092 |
aagtgggtggcttggatgaaagcttgtgttttttgtgggagtatgtccattcttgtgaatggtagtccaacggaggagatttgcattcatcgaggcctta |
17991993 |
T |
|
| Q |
695 |
aacaaggagatcccctagctccgtttttatttccccaagtggcggaaggcttcagtggcttgatgaggaatgcgg |
769 |
Q |
| |
|
||||||| |||||||| || || ||||| |||| | | ||||||||| || || ||||||||||||||||||| |
|
|
| T |
17991992 |
aacaaggggatccccttgccccttttttgtttctcttggcggcggaaggatttagcggcttgatgaggaatgcgg |
17991918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 594 - 726
Target Start/End: Original strand, 20695963 - 20696095
Alignment:
| Q |
594 |
gaagtgggtggcttggatgaaagcgtgtgtgtgtggtggaaatatgttcgttcttgtaaatggaatcccaatggaagaaatttgcattcaaacagacctt |
693 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||| || | ||||| ||||||| ||||||| ||||| ||| || ||||| ||||||| || |||| |
|
|
| T |
20695963 |
gaagtgggtggcttggatgaagacttgtgtgtttggagggagtatgtctattcttgttaatggaagcccaacggaggagatttgtattcaaagaggcctt |
20696062 |
T |
|
| Q |
694 |
aaacaaggagatcccctagctccgtttttattt |
726 |
Q |
| |
|
|||||||| ||||| |||| ||||| |||||| |
|
|
| T |
20696063 |
aaacaaggtgatcctttagccccgttcttattt |
20696095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 44516394 - 44516315
Alignment:
| Q |
112 |
gatcattgtccttttctcctaaaagtggaaggttgggattggggcccaaaaccgttctgttttaataatttttggttgga |
191 |
Q |
| |
|
|||||||| ||||| |||| ||||||| |||||||||||||| || ||||||||| | ||||| |||||||||||||| |
|
|
| T |
44516394 |
gatcattgccctttggtccttaaagtgggtggttgggattgggggccgaaaccgttccgatttaacaatttttggttgga |
44516315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 657
Target Start/End: Complemental strand, 8506174 - 8506115
Alignment:
| Q |
598 |
tgggtggcttggatgaaagcgtgtgtgtgtggtggaaatatgttcgttcttgtaaatgga |
657 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||| ||||||| | |||| ||||||||| |
|
|
| T |
8506174 |
tgggtggcttggatgaaggcgtgtgtttttggtggtaatatgtccattctagtaaatgga |
8506115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 604 - 674
Target Start/End: Original strand, 46661546 - 46661616
Alignment:
| Q |
604 |
gcttggatgaaagcgtgtgtgtgtggtggaaatatgttcgttcttgtaaatggaatcccaatggaagaaat |
674 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||| |||||||||| |||| ||||| ||||||||| |
|
|
| T |
46661546 |
gcttggatgaaggcttgtgtgtgtggtggtggtatgttgattcttgtaaacggaagcccaacggaagaaat |
46661616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University