View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_high_10 (Length: 562)
Name: NF17158_high_10
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_10 |
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| [»] scaffold0331 (1 HSPs) |
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| [»] scaffold0164 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 7205824 - 7205533
Alignment:
| Q |
21 |
ttgtgattcttataagttctaactttatttt-gtattaattttgctctgttaaatgaatcatggcaaatgggttaagttatgagaaagaagggttctgtg |
119 |
Q |
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||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7205824 |
ttgtgattcttctaagttctaactttatttttgtactaattttgctctgttaattgaatcatggcaaatgggttaagttatgagaaagaagggttatgtg |
7205725 |
T |
|
| Q |
120 |
caaatgagttttgttaatatgcttattttgttttgttaattgaatcatggcaaatgggttccgccgttgggtttctcacttcttagttctgttaattgat |
219 |
Q |
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|||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||||| |
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| T |
7205724 |
caaatgggttctgttaatatgcttattttgttctgttaattgaatcatggcaaataggttctgtcattgggtttctcacttcttagttctgttaattgat |
7205625 |
T |
|
| Q |
220 |
catggcatgtgtgtcaatcagcaagctacaacctgaatcatttgccttttaattttgttaattgagctttgaactctattaattcatcacta |
311 |
Q |
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| T |
7205624 |
catggcatgtgtgtcaatctgcaagttgcaactttaatcatttgccttttaattttgttaattgatctttgaactctattaattcatcacta |
7205533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 348
Target Start/End: Original strand, 815 - 1140
Alignment:
| Q |
24 |
tgattcttataagttctaactttatttt-gtattaattttgctctgttaaatgaatcatggcaaatgggttaagttatgagaaagaagggttctgtgcaa |
122 |
Q |
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|||||||| |||||||||| || ||||| |||||||| | || ||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||| |
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| T |
815 |
tgattcttctaagttctaatttgatttttgtattaatatccttcggttaattgaatcatggcaaatgggtttagttatgagaaagaggggttctatgcaa |
914 |
T |
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| Q |
123 |
atgagttttgttaatatgcttattttgttttgttaattgaatcatggcaaatgggttccgccgttgggtttctcacttcttagttctgttaattgatcat |
222 |
Q |
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||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
915 |
atgggttctgttaatatgcttattttgttttggtaattgaatcatggcaaataggttccgttgttgggtttctcacttcttagttctgttaattgatcat |
1014 |
T |
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| Q |
223 |
ggcatgtgtgtcaatcagcaagctacaacctgaatcatttgccttttaattttgttaattgagctttgaactctattaattcatcactagtttggatttt |
322 |
Q |
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||||||| ||||| || ||||||||||||||||||||| |||||| | |||||||||||||| |||| ||||||| ||| |||||||||||||||||| | |
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| T |
1015 |
ggcatgtttgtcagtctgcaagctacaacctgaatcatctgccttctgattttgttaattgatctttcaactctagtaagtcatcactagtttggattct |
1114 |
T |
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| Q |
323 |
atagatcatttagcacacattaacta |
348 |
Q |
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|||||||||||| |||| |||||||| |
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| T |
1115 |
atagatcatttatcacagattaacta |
1140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 48009722 - 48009876
Alignment:
| Q |
21 |
ttgtgattcttataagttctaactttatttt-gtattaattttgctctgttaaatgaatcatggcaaatgggttaagttatgagaaagaagggttctgtg |
119 |
Q |
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||||||||||| |||||| ||| |||||||| |||||||||||| | |||||| |||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
48009722 |
ttgtgattcttctaagttataattttatttttgtattaattttgttatgttaagtgaatcatggcaaatgggctaagttatgagaaataagggttctgtg |
48009821 |
T |
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| Q |
120 |
caaatgagttttgttaatatgcttattttgttttgttaattgaatcatggcaaat |
174 |
Q |
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|||| ||||| ||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
48009822 |
caaacgagttctgttaatatgcttattttgttatgttaattgaatcatgacaaat |
48009876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 479 - 550
Target Start/End: Original strand, 53929203 - 53929274
Alignment:
| Q |
479 |
gtttaaagtggacccctaatttaattagttttatctccactaactgctatctatttttatttacaggttctg |
550 |
Q |
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| T |
53929203 |
gtttaaagtggacccctaatttaattagtttgatctccactaactgctatctatttttatttacaggttctg |
53929274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 354 - 457
Target Start/End: Original strand, 53929011 - 53929115
Alignment:
| Q |
354 |
cacattgcactgttttcctcttgtctactgtttactaagcacaacctt-gtatctgagtgggtttttctccatctttgatctaattctaaatcttagcag |
452 |
Q |
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||||||||||||||||||||||||| | |||||||||||||| |||| || ||| ||||||||||| ||| ||||| || || |||||||||||||||| |
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| T |
53929011 |
cacattgcactgttttcctcttgtcgaaggtttactaagcacatccttggtgtctaagtgggtttttatccctctttcatttacttctaaatcttagcag |
53929110 |
T |
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| Q |
453 |
tatag |
457 |
Q |
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||||| |
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| T |
53929111 |
tatag |
53929115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 257 - 348
Target Start/End: Complemental strand, 7403248 - 7403157
Alignment:
| Q |
257 |
tcatttgccttttaattttgttaattgagctttgaactctattaattcatcactagtttggattttatagatcatttagcacacattaacta |
348 |
Q |
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||||||||||| | |||||||||||||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||| |||| |||||||| |
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| T |
7403248 |
tcatttgccttctgattttgttaattgatctttcaactctagtaagtcatcactagtttggattctatagatcatttatcacagattaacta |
7403157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 22276 - 22234
Alignment:
| Q |
83 |
gcaaatgggttaagttatgagaaagaagggttctgtgcaaatg |
125 |
Q |
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| T |
22276 |
gcaaatgggttaagttgtgagaaagaagggttctgtgaaaatg |
22234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 85442 - 85497
Alignment:
| Q |
286 |
ctttgaactctattaattcatcactagtttggattttatagatcatttagcacacat |
342 |
Q |
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||||||| ||||| ||||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
85442 |
ctttgaaatctatgaattcatcacttgtt-ggattttggagatcatttagcacacat |
85497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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