View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17158_high_12 (Length: 500)

Name: NF17158_high_12
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17158_high_12
NF17158_high_12
[»] chr1 (12 HSPs)
chr1 (258-493)||(16584750-16584984)
chr1 (258-485)||(1161327-1161553)
chr1 (258-493)||(8084053-8084290)
chr1 (2-211)||(16585030-16585246)
chr1 (258-493)||(11619984-11620216)
chr1 (258-446)||(18461175-18461362)
chr1 (258-404)||(25785817-25785962)
chr1 (258-480)||(42009883-42010089)
chr1 (396-475)||(25787286-25787365)
chr1 (259-447)||(11911652-11911839)
chr1 (259-320)||(513020-513081)
chr1 (335-447)||(32678388-32678500)
[»] chr7 (10 HSPs)
chr7 (258-491)||(7352258-7352489)
chr7 (258-485)||(39695148-39695370)
chr7 (265-491)||(46993321-46993552)
chr7 (265-480)||(7995018-7995234)
chr7 (296-381)||(11727326-11727410)
chr7 (335-475)||(35738033-35738177)
chr7 (259-446)||(46265238-46265422)
chr7 (273-435)||(2197614-2197775)
chr7 (263-365)||(2923024-2923125)
chr7 (265-447)||(25545139-25545320)
[»] chr8 (10 HSPs)
chr8 (267-490)||(44223215-44223438)
chr8 (265-493)||(7956226-7956453)
chr8 (258-469)||(35948893-35949101)
chr8 (258-461)||(17722330-17722540)
chr8 (259-478)||(25456027-25456251)
chr8 (259-410)||(3767625-3767775)
chr8 (293-447)||(9040513-9040666)
chr8 (267-338)||(34760846-34760917)
chr8 (258-421)||(9505082-9505244)
chr8 (258-352)||(16570889-16570982)
[»] chr4 (6 HSPs)
chr4 (268-493)||(28319176-28319400)
chr4 (258-491)||(23107789-23108031)
chr4 (267-486)||(24466202-24466426)
chr4 (258-420)||(4413520-4413681)
chr4 (259-329)||(53393204-53393274)
chr4 (259-479)||(8606028-8606251)
[»] chr2 (7 HSPs)
chr2 (258-493)||(31111479-31111713)
chr2 (268-485)||(13852163-13852379)
chr2 (311-488)||(36009278-36009462)
chr2 (258-493)||(4638220-4638469)
chr2 (257-493)||(38607032-38607275)
chr2 (259-493)||(29109042-29109281)
chr2 (268-329)||(3919904-3919965)
[»] scaffold0879 (1 HSPs)
scaffold0879 (267-486)||(467-691)
[»] chr5 (4 HSPs)
chr5 (258-469)||(19947774-19947984)
chr5 (258-443)||(16746357-16746541)
chr5 (258-485)||(31895962-31896181)
chr5 (258-366)||(16746553-16746660)
[»] chr3 (7 HSPs)
chr3 (258-446)||(46655581-46655768)
chr3 (259-447)||(44471084-44471271)
chr3 (259-421)||(11503284-11503445)
chr3 (259-329)||(30554588-30554658)
chr3 (259-338)||(779538-779617)
chr3 (265-338)||(44682037-44682111)
chr3 (258-303)||(46892670-46892715)
[»] scaffold0565 (1 HSPs)
scaffold0565 (258-491)||(1729-1964)
[»] chr6 (5 HSPs)
chr6 (259-447)||(11846307-11846494)
chr6 (355-493)||(1208720-1208864)
chr6 (271-493)||(9826816-9827043)
chr6 (259-328)||(7176529-7176598)
chr6 (265-329)||(23301484-23301548)
[»] scaffold0070 (1 HSPs)
scaffold0070 (265-478)||(13819-14037)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 258 - 493
Target Start/End: Complemental strand, 16584984 - 16584750
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16584984 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggtttttta-tttcgagatccgtgaa 16584886  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatac 457  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  16584885 accgatgaaccaatctgatgataaccaaactccttattttactaatattatcatacctcacacaaacttatggttagacccaaaattaaacataaaatac 16584786  T
Q  458 tttttaatccattcactttctctaatcttcatctca 493  Q
    ||||||||||||||||||||||||||||||||||||    
T  16584785 tttttaatccattcactttctctaatcttcatctca 16584750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 258 - 485
Target Start/End: Complemental strand, 1161553 - 1161327
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| ||||| ||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||    
T  1161553 atatccgaccttatttggttcggtttgaaaccaatccaagccaatcgaaaccgatctagtttggtttggttcatggtttttca-tttcgatatccgtgaa 1161455  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatac 457  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||     
T  1161454 accgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttcagcccaaaattaaacataaaatat 1161355  T
Q  458 tttttaatccattcactttctctaatct 485  Q
    ||||||||||||||||||||||| ||||    
T  1161354 tttttaatccattcactttctcttatct 1161327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 258 - 493
Target Start/End: Original strand, 8084053 - 8084290
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||||||||    
T  8084053 atatccgaccttgtttggtttggtttgaaaccaatccgaaccaatcgaaaccgatctagtttggtttggttcatggtttttca-tttcaagatccgtgaa 8084151  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaata---ttatcctacctcacacaaacttatggttaggcccaaaattaaacataaaa 454  Q
    || |||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  8084152 actgatgaatcaatccgatgataaccacactccttattttactaatccatttatcctacctcacacaaactcatggttaggcacaaaattaaacataaaa 8084251  T
Q  455 tactttttaatccattcactttctctaatcttcatctca 493  Q
    || ||||||||| ||||||||||||| ||||||||||||    
T  8084252 taatttttaatctattcactttctctcatcttcatctca 8084290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 16585246 - 16585030
Alignment:
Q  2 ttatcagtcatagtcttggtcgtcacgaagtgttcttagaccctaacggtacctcttgtgtgtttgtggtgcaccatctttttattacttgtgagtttac 101  Q
    |||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  16585246 ttatcagttatagtcttcgtcgtcaagaagtgttcttagaccctaacggtacctcttgtgtgtttgtggtgcaccatcttttcattacttgtgagtttcc 16585147  T
Q  102 cattcatgcttgttataagatttggacgtggttggggggaagtgagttatgccccttgatct-------ttgtgattagttttttaggcctttgagtagg 194  Q
    ||||||||  ||| ||||||||||||   |||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||    
T  16585146 cattcatgtgtgtaataagatttggataaggttggggggaagtgagttatgccccttgatctactctacttgtgatcagttttttaggcctttgagtagg 16585047  T
Q  195 ggtgtaagtggttcgga 211  Q
    |||||||||||||||||    
T  16585046 ggtgtaagtggttcgga 16585030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 258 - 493
Target Start/End: Original strand, 11619984 - 11620216
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| | |||||||||||| ||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| ||||| |||| |||||| |||||    
T  11619984 atatccgatcttgtttggttcagtttgaaaccgatccaaactaatcgaaaccgatctagtttggtttggttcatgg-tttttcattttgagatctgtgaa 11620082  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatac 457  Q
    ||||||||| ||||| |||||||  |||||| ||||||||||||||||||||||||||  ||||||||||||||||  ||||||||||||||| ||||||    
T  11620083 accgatgaaccaatccgatgatactcacactacttattttactaatattatcctacct--cacaaacttatggttaaacccaaaattaaacatgaaatac 11620180  T
Q  458 tttttaatccattcactttctctaatcttcatctca 493  Q
    ||||||||| ||||||||||||  ||||||||||||    
T  11620181 tttttaatcaattcactttctcccatcttcatctca 11620216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 258 - 446
Target Start/End: Original strand, 18461175 - 18461362
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| ||||||||| ||||||||| ||| ||||| | ||||||| | |||||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  18461175 atatccgaccttgtttagttcggtttcaaatcgatctggaccaatcaaaaccgatttagtttggtttggttcatgatttttta-tttcgagatccgtgaa 18461273  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaa 446  Q
    ||||||||| ||||| |||||||||||||||| ||| |||| ||||||||||| ||||| |||||||||||||||| ||||||||||||    
T  18461274 accgatgaaccaatccgatgataaccacactcattaatttattaatattatccaacctcgcacaaacttatggttaagcccaaaattaa 18461362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 258 - 404
Target Start/End: Original strand, 25785817 - 25785962
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  25785817 atatccgaccttgtttggttcggtttgaaaccgatccgaaccaatcgaaaccgatatagtttggtttggttcatgg-tttttcatttcgagatccgtgaa 25785915  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaata 404  Q
    ||||||||| ||||| ||||||||||||| || ||||||||||||||    
T  25785916 accgatgaaccaatccgatgataaccacattctttattttactaata 25785962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 480
Target Start/End: Complemental strand, 42010089 - 42009883
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |||||  ||||||| |||| |||| |||||||         
T  42010089 atatccgacattgtttggttcggtttgaaaccgatccaaaccaattgaaaccgatctagtttagtttgactcatggt-ttttcattttgagatcc----- 42009996  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta-----aacataa 452  Q
                    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||     |||||||    
T  42009995 ----------------gatgataaccacactccttatattactaatagtatcctacctcacacaaacttatggttaggcctaaaattaaagtcaacataa 42009912  T
Q  453 aatac-tttttaatccattcactttctct 480  Q
    ||||| ||||| ||||||||| |||||||    
T  42009911 aatactttttttatccattcattttctct 42009883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 396 - 475
Target Start/End: Original strand, 25787286 - 25787365
Alignment:
Q  396 ttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatactttttaatccattcactt 475  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||| |||||    
T  25787286 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcactt 25787365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 447
Target Start/End: Original strand, 11911652 - 11911839
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaa 358  Q
    ||||| ||||||||||||||||||  ||||||| ||||||||| | | |||||||||||||| ||| |||| ||| |||||||||| || |||||   ||    
T  11911652 tatccgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaaccgatctagtttgatttagttcttgg-tttttaattttgaaatccgatgaa 11911750  T
Q  359 ccgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaa 447  Q
    |||||||| ||| | |||  ||| | ||||||  |||| | |||||||||||  | |||| || ||||||| ||| || ||||||||||    
T  11911751 ccgatgaaccaaaccgatactaaactcactccccatttgagtaatattatccctcatcacgcacacttatgattaagctcaaaattaaa 11911839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 513020 - 513081
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttg 320  Q
    ||||||| ||||||||||||||||  ||||| | ||||||||| | | ||||||||||||||    
T  513020 tatccaatcttgtttggttcggttcaaaaccaaaccgaaccaacctaaaccgatctagtttg 513081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 447
Target Start/End: Complemental strand, 32678500 - 32678388
Alignment:
Q  335 tttttaatttcgagatccgtgaaaccgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttag 434  Q
    |||||||||| |||||||    |||||||||||| | |||||| ||||| ||||||  |||||| |||||||||||  | | ||||| ||||||| |||     
T  32678500 tttttaattttgagatccaatgaaccgatgaatcgaactgatgctaacctcactccccattttagtaatattatccctcataacacacacttatgattaa 32678401  T
Q  435 gcccaaaattaaa 447  Q
     | ||||||||||    
T  32678400 actcaaaattaaa 32678388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 258 - 491
Target Start/End: Complemental strand, 7352489 - 7352258
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| || || ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||    
T  7352489 atatccgactttatttggtttggtttgaaaccgatccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttca-tttcgagatccgtgaa 7352391  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatac 457  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||    
T  7352390 accgat-aatcaatccgatgataaccacactccttattttactaatattatcctacgtcacacaaacttatagttagacccaaaattaaacataaaatac 7352292  T
Q  458 tttttaatccattcactttctctaatcttcatct 491  Q
     |||||||||||||||||||||| ||||||||||    
T  7352291 gttttaatccattcactttctctcatcttcatct 7352258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 258 - 485
Target Start/End: Original strand, 39695148 - 39695370
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||||||| ||||| |||||||| ||||||||    
T  39695148 atatccgaccttgtttggttcggtttgaaaccgatctgaaccaatcgaaactgatatagtttggtttggttcatgg-tttttcatttcgaggtccgtgaa 39695246  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatac 457  Q
    ||||||||| |||||||||||||||| |||||||||||||||    |||||| |||||||||||||||||||||||| |||||||||||||||||||||     
T  39695247 accgatgaaccaatctgatgataacctcactccttattttac----attatcttacctcacacaaacttatggttagacccaaaattaaacataaaataa 39695342  T
Q  458 tttttaatccattcactttctctaatct 485  Q
    ||||| ||||||||| ||||||| ||||    
T  39695343 tttttcatccattcattttctctcatct 39695370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 265 - 491
Target Start/End: Original strand, 46993321 - 46993552
Alignment:
Q  265 accttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatg 364  Q
    ||||||||||| |||||||||||  |||||||| ||||||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||||||     
T  46993321 accttgtttgggtcggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatggtttttca-tttcgagatccgtgaaaccgatt 46993419  T
Q  365 aatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta------aacataaaatact 458  Q
    || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||      |||||||||||||    
T  46993420 aaccaatccgatgataaccacactccttattttactaatattatcgtacctcacacaaacttaaggttaagcccaaaattaaagtccaacataaaatact 46993519  T
Q  459 ttttaatccattcactttctctaatcttcatct 491  Q
    |||||||||||||| ||||||| ||||||||||    
T  46993520 ttttaatccattcaatttctctcatcttcatct 46993552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 265 - 480
Target Start/End: Original strand, 7995018 - 7995234
Alignment:
Q  265 accttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatg 364  Q
    ||||||||||||||||||  ||| |||||||||||||| || |||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||    
T  7995018 accttgtttggttcggttgaaaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcatttt-gagattcgtgaaaccgatg 7995116  T
Q  365 aatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta-----aacataaaatactt 459  Q
    || ||||| ||| |||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||     |||||| |||||||    
T  7995117 aaccaatccgataataaccacactccttattttactaatattatcttacct--cacaaacttatggttagg-ccaaaattaaagtcaacatagaatactt 7995213  T
Q  460 tttaatccattcactttctct 480  Q
    ||||||||||||| |||||||    
T  7995214 tttaatccattcattttctct 7995234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 296 - 381
Target Start/End: Complemental strand, 11727410 - 11727326
Alignment:
Q  296 aaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatgaatcaatctgatgataa 381  Q
    |||||||| | ||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||| || ||||| ||||||||    
T  11727410 aaccaatcaaaaccgatctagtttggtttggttcgtgg-tttttcatttcgagatccgtaaaaccgataaaccaatccgatgataa 11727326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 475
Target Start/End: Complemental strand, 35738177 - 35738033
Alignment:
Q  335 tttttaatttcgagatccgtgaaaccgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttag 434  Q
    ||||| |||| |||||||  | ||||||| || ||| |||||  ||||| ||||||  ||||||||||||||||||  | ||||||  ||||||| ||||    
T  35738177 tttttcattttgagatccaaggaaccgatcaaccaaactgattgtaaccccactccccattttactaatattatccctcatcacac--acttatgattag 35738080  T
Q  435 gcccaaaatta------aacataaaatactttttaatccattcactt 475  Q
    |||||||||||      |||||||||||||  |||||||||||||||    
T  35738079 gcccaaaattaaattccaacataaaatactccttaatccattcactt 35738033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 446
Target Start/End: Complemental strand, 46265422 - 46265238
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaa 358  Q
    ||||| |||||||  |||||||||  ||||||| ||||| ||||| | |||||||| |||||||||||||  |   ||| | |||| |||||||  ||||    
T  46265422 tatccgaccttgtcgggttcggttcaaaaccgaaccgaatcaatctaaaccgatcttgtttggtttggtt-ttcagtttgtcattttgagatccaagaaa 46265324  T
Q  359 ccgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaa 446  Q
    |||||||| |||    ||| ||||  ||||||| ||||||||| |||| |||| ||||||||  ||||||| ||| ||||||||||||    
T  46265323 ccgatgaaccaaatcaatgttaactccactcctcattttactattattgtccttcctcacac--acttatgattatgcccaaaattaa 46265238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 2197775 - 2197614
Alignment:
Q  273 tggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatgaatcaatc 372  Q
    ||||||||||  ||||||||| ||||||||| | | ||| || ||||| || |||||  ||||||| | ||| |||||||  ||||||||| || ||| |    
T  2197775 tggttcggttctaaaccgatctgaaccaatctaaatcgaccttgtttgattgggttctcggtttttcatttt-gagatccaagaaaccgatcaaccaaac 2197677  T
Q  373 tgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttagg 435  Q
     |||| ||||  ||||||  ||||||||||||||||||| |||| |||| |||| || |||||    
T  2197676 cgatgctaacttcactccccattttactaatattatccttcctcgcacacacttgtgcttagg 2197614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 365
Target Start/End: Original strand, 2923024 - 2923125
Alignment:
Q  263 caaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccga 362  Q
    ||||||||| ||||||||||  ||||||| ||||||||||| | ||||| || ||||| || ||||| | | ||||| |||| |||||||  ||||||||    
T  2923024 caaccttgtatggttcggttcaaaaccgaaccgaaccaatctacaccgaccttgtttgattcggttc-ttgatttttcattttgagatccaagaaaccga 2923122  T
Q  363 tga 365  Q
    |||    
T  2923123 tga 2923125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 447
Target Start/End: Complemental strand, 25545320 - 25545139
Alignment:
Q  265 accttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatg 364  Q
    |||||| |||||||||||  ||||||| |  |||||| | | ||||||||||||||||||||||| |    |||||||||  | ||||    |||| |||    
T  25545320 accttgattggttcggttcaaaaccgaactaaaccaacctaaaccgatctagtttggtttggttc-tcaacttttaattttaaaatccaaagaaccaatg 25545222  T
Q  365 aatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaa 447  Q
    |||| | |  ||| ||||| ||||||  |||||| |||||||||||| ||||||| | ||||||| ||| || ||||||||||    
T  25545221 aatcgaaccaatgctaacctcactccccattttagtaatattatcctgcctcacatacacttatgattaagctcaaaattaaa 25545139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 5e-88; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 267 - 490
Target Start/End: Complemental strand, 44223438 - 44223215
Alignment:
Q  267 cttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatgaa 366  Q
    |||||||||||| |||| ||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||||||    
T  44223438 cttgtttggttcagtttaaaaccgatctgaaccaatcgaaaccaatctagtttggtttggttcatgatttttca-tttcgagatccgtgaaaccgatgaa 44223340  T
Q  367 tcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatact-ttttaat 465  Q
     ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44223339 ccaatccgatgataaccacactccttattttacaaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatacttttttaat 44223240  T
Q  466 ccattcactttctctaatcttcatc 490  Q
    ||||||||||||||| |||||||||    
T  44223239 ccattcactttctctcatcttcatc 44223215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 265 - 493
Target Start/End: Complemental strand, 7956453 - 7956226
Alignment:
Q  265 accttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatg 364  Q
    |||||| || ||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||  ||||||||||||    
T  7956453 accttgctttgtttggtttgaaaccgattcgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcatttt-gagatatgtgaaaccgatg 7956355  T
Q  365 aatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatactttttaa 464  Q
    || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  7956354 aaccaatccgatgataaccatactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaa 7956255  T
Q  465 tccattcactttctctaatcttcatctca 493  Q
    | ||||| |||||||| || |||||||||    
T  7956254 tacattctctttctctcatattcatctca 7956226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 258 - 469
Target Start/End: Original strand, 35948893 - 35949101
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| || |||||||||||||||||||||||||||||| || || | | ||||||||||||||||| |||||||||||| | ||||||||||| ||||    
T  35948893 atatccgactttgtttggttcggtttgaaaccgatccgaatcattcaaaatcgatctagtttggtttgattcatggtttttca-tttcgagatccatgaa 35948991  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatac 457  Q
    ||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  35948992 accgatgaaccaatccgatgataacaacattccttattttactaatattatcctacct--cacaaacttatggttaggcccaaaattaaacataaaatac 35949089  T
Q  458 tttttaatccat 469  Q
    ||||||||||||    
T  35949090 tttttaatccat 35949101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 258 - 461
Target Start/End: Complemental strand, 17722540 - 17722330
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| | ||||| ||||||||||| |||||    
T  17722540 atatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcat-gatttttcatttcgagatctgtgaa 17722442  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatatta--------tcctacctcacacaaacttatggttaggcccaaaattaaaca 449  Q
    ||||||||| ||||| |||||||||||||||| ||| |||||||||||||        |||||||||||||| ||| |||||||||||||||||||||||    
T  17722441 accgatgaaccaatccgatgataaccacactcattactttactaatattatcataaattcctacctcacacatactcatggttaggcccaaaattaaaca 17722342  T
Q  450 taaaatactttt 461  Q
    ||||||| ||||    
T  17722341 taaaataatttt 17722330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 478
Target Start/End: Complemental strand, 25456251 - 25456027
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaa 358  Q
    ||||| ||||||| |||||| |||  ||||||| ||||| ||||| | ||| |||| ||||||||||||| || | ||||| |||| |||||||   |||    
T  25456251 tatccgaccttgtctggttcagttcaaaaccgaaccgaatcaatctaaaccaatcttgtttggtttggtt-atcggtttttcattttgagatccaataaa 25456153  T
Q  359 ccgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaa------cataa 452  Q
    |||||||||| | |||||| ||||| ||||||  ||||||||| ||||||||  | ||||||| |||||||  || |||||||||||||      |||||    
T  25456152 ccgatgaatcgaactgatgctaacctcactccccattttactattattatccctcttcacacacacttatgagtatgcccaaaattaaagcccagcataa 25456053  T
Q  453 aatactttttaatccattcactttct 478  Q
    | ||||  ||||||||||||||||||    
T  25456052 agtactacttaatccattcactttct 25456027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 410
Target Start/End: Complemental strand, 3767775 - 3767625
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaa 358  Q
    ||||| ||||||||| ||||||||  ||||||| ||||||||||| | |||||||||||||||||||||||  |||||||| |||| |||||||    ||    
T  3767775 tatccgaccttgtttagttcggttcaaaaccgaaccgaaccaatctaaaccgatctagtttggtttggttctcggtttttt-attttgagatccaatgaa 3767677  T
Q  359 ccgatgaatcaatctgatgataaccacactccttattttactaatattatcc 410  Q
    |||||||| | | | |||| ||||| ||||||  |||||| |||||||||||    
T  3767676 ccgatgaaccgaaccgatgctaacctcactccccattttagtaatattatcc 3767625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 447
Target Start/End: Original strand, 9040513 - 9040666
Alignment:
Q  293 ccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatgaatcaatctgatgataaccacactcctt 392  Q
    ||||||||||| | |||||||| ||||||||||||||  ||||||| | ||| ||||||   |||||||||||| | |  ||||| ||||| |||| |      
T  9040513 ccgaaccaatctaaaccgatcttgtttggtttggttctcggtttttcatttt-gagatctaagaaaccgatgaaccgagttgatgctaaccccacttccc 9040611  T
Q  393 attttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaa 447  Q
    ||||||||| ||||||||  ||||||||| ||||||| |||||| ||||||||||    
T  9040612 attttactattattatccctcctcacacacacttatgattaggctcaaaattaaa 9040666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 34760917 - 34760846
Alignment:
Q  267 cttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttt 338  Q
    ||||||||||||||||  ||| ||| ||||||||| | | ||||||||||||||||||||||| ||||||||    
T  34760917 cttgtttggttcggttcaaaatcgaaccgaaccaacctaaaccgatctagtttggtttggttcttggttttt 34760846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 421
Target Start/End: Original strand, 9505082 - 9505244
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||||||||||||||||||| ||  ||| ||| ||||||||| | | |||||| |||||||||| ||||| | |  ||||||||| || ||||   ||    
T  9505082 atatccaaccttgtttggttcgattcaaaatcgaaccgaaccaaccaaaaccgatatagtttggttcggttc-taggattttaattttgaaatccaacaa 9505180  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacaca 421  Q
    |||||| || | | | ||||  |||| ||||||  |||||| |||||||||||| |||||||||    
T  9505181 accgataaaccgaaccgatgccaacctcactccccattttagtaatattatccttcctcacaca 9505244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 352
Target Start/End: Complemental strand, 16570982 - 16570889
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatcc 352  Q
    |||||||||||||||||||| ||||  ||||||| || |||||| | | ||||||||| ||||||| ||||| | | |||||||||| |||||||    
T  16570982 atatccaaccttgtttggtttggttcaaaaccgaaccaaaccaacctaaaccgatctaatttggttaggttc-tcgatttttaattttgagatcc 16570889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 268 - 493
Target Start/End: Complemental strand, 28319400 - 28319176
Alignment:
Q  268 ttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatgaat 367  Q
    ||||||||||||||||||||||| |||||||||||| | | |||| || |||||||||||||||||||||| | ||||||||| |||||| | |||||||    
T  28319400 ttgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatttaatttggtttggttcatggtttttca-tttcgagattcgtgaacctgatgaat 28319302  T
Q  368 caatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatactttttaatcc 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  28319301 caatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatattttttaatca 28319202  T
Q  468 attcactttctctaatcttcatctca 493  Q
    ||||||||||||| || |||||||||    
T  28319201 attcactttctctcattttcatctca 28319176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 258 - 491
Target Start/End: Complemental strand, 23108031 - 23107789
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||    
T  23108031 atatccgaccttgtttggtttggtttgaaaccgatccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttca-tttcgagatccgtgaa 23107933  T
Q  358 accgatgaa----tcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta------aa 447  Q
    |||||||||    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||    
T  23107932 accgatgaaccaatcaatccgatgataaccatactccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaa 23107833  T
Q  448 cataaaatactttttaatccattcactttctctaatcttcatct 491  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  23107832 cataaaatactttttaatccattcactttctctaatcatcatct 23107789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 267 - 486
Target Start/End: Complemental strand, 24466426 - 24466202
Alignment:
Q  267 cttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatgaa 366  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||    
T  24466426 cttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcatttt-gagatccgtgaaaccgatgaa 24466328  T
Q  367 tcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta------aacataaaatacttt 460  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||      |||||||||||||||    
T  24466327 ccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatacttt 24466228  T
Q  461 ttaatccattcactttctctaatctt 486  Q
    |||||||||||||||||||| |||||    
T  24466227 ttaatccattcactttctctcatctt 24466202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 258 - 420
Target Start/End: Original strand, 4413520 - 4413681
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||||||||||||    
T  4413520 atatccgatcttgtttggttcggtttaaaaccgatccgaaccaatcgaaaccgatctagtttgctttggttcatggtttttca-tttcgagatccgtgaa 4413618  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacac 420  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  4413619 accgataaaccaatccgatgataatcacactccttattttactagtattatcctacctcacac 4413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 53393274 - 53393204
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttc 329  Q
    ||||| ||||||||||||||||||| |||| || ||||||||| | | ||||||||||||||||| |||||    
T  53393274 tatccgaccttgtttggttcggtttaaaactgaaccgaaccaacctaaaccgatctagtttggttcggttc 53393204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 479
Target Start/End: Complemental strand, 8606251 - 8606028
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaa 358  Q
    |||||||| |||||||| ||||||  ||||| |  |||||||||| | |||||||| | |||||| |||||   |||||| | ||| |||||||  | ||    
T  8606251 tatccaactttgtttggctcggttcaaaaccaaatcgaaccaatctaaaccgatcttggttggttcggttctcagtttttcatttt-gagatccaaggaa 8606153  T
Q  359 ccgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta------aacataa 452  Q
    || ||||||| | | |||| ||||||||||||  ||||||||||||| ||    ||||| ||  ||||||  |||||||||||||||      |||||||    
T  8606152 ccaatgaatcgaaccgatggtaaccacactccccattttactaatataatttctcctcatac--acttattattaggcccaaaattaaagtccaacataa 8606055  T
Q  453 aatactttttaatccattcactttctc 479  Q
    ||||||  ||||| |||||||||||||    
T  8606054 aatactccttaattcattcactttctc 8606028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 5e-85; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 258 - 493
Target Start/End: Original strand, 31111479 - 31111713
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| |||||||||||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||| | ||| ||||||| ||||    
T  31111479 atatccgaccttgtttggttcggtttgaaactgatctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcatttt-gagatccttgaa 31111577  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatac 457  Q
    |||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||    
T  31111578 accgataaaccaatctggtgataaccacacttcttattttactaatattatcctacctcacacaaaattatggttaggcgcaaaattaaatataaaatac 31111677  T
Q  458 tttttaatccattcactttctctaatcttcatctca 493  Q
    |||||||| |||||||||||||| ||||||||||||    
T  31111678 tttttaattcattcactttctctcatcttcatctca 31111713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 268 - 485
Target Start/End: Complemental strand, 13852379 - 13852163
Alignment:
Q  268 ttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatgaat 367  Q
    ||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||| | ||| |||||||||||||||||||||     
T  13852379 ttgtttgattcggtttgaaaccgatccaaaccaatcaaaaccgatctagtttggtttggttcatagtttttcatttt-gagatccgtgaaaccgatgaac 13852281  T
Q  368 caatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatactttttaatcc 467  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||    
T  13852280 caatctgttgataaccacactccttattttattaatattatcttacctcacacaaacttaaggttatgaccaaaattaaacataaaatattttttaatcc 13852181  T
Q  468 attcactttctctaatct 485  Q
    ||||||||||||| ||||    
T  13852180 attcactttctctcatct 13852163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 311 - 488
Target Start/End: Original strand, 36009278 - 36009462
Alignment:
Q  311 atctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatgaatcaatctgatgataaccacactccttattttactaatattatc- 409  Q
    |||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  36009278 atctagtttggtttggttcatggtttttca-tttcgagatccatgaaaccgatgaatcaatccgatgataaccacactccttattttactaatattatcc 36009376  T
Q  410 -------ctacctcacacaaacttatggttaggcccaaaattaaacataaaatactttttaatccattcactttctctaatcttca 488  Q
           |||||| ||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  36009377 tacatttctaccttacacaaattcatggttaggtccaaaattaaacataaaataatttttaatccattcactttctctcatcttca 36009462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 258 - 493
Target Start/End: Original strand, 4638220 - 4638469
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||| ||||| |||| ||||||||||||    
T  4638220 atatccgaccttgttcggttcggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatgg-tttttcattttgagatccgtgaa 4638318  T
Q  358 accgatgaatcaatctgatgataaccacactcctta----ttttactaatattatcctac-----ctcacacaaacttatggttaggcccaaaatta--- 445  Q
    ||||||||| ||||| ||||||||||||||||||||    |||||||||||||||||| |     |||||||||| |||||||||| ||||||||||       
T  4638319 accgatgaaccaatccgatgataaccacactccttaattcttttactaatattatcctcctcacactcacacaaaattatggttagacccaaaattaaag 4638418  T
Q  446 ---aacataaaatactttttaatccattcactttctctaatcttcatctca 493  Q
       ||| |||| ||||||| |||||||||||||| ||||||| ||||||||    
T  4638419 tccaacttaaactacttttcaatccattcactttttctaatcctcatctca 4638469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 257 - 493
Target Start/End: Original strand, 38607032 - 38607275
Alignment:
Q  257 tatatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtga 356  Q
    ||||||| |||||||||| |||| ||  ||||||| ||||||||||| | || || || |||||||| ||||| |||||||| | ||| ||||||| | |    
T  38607032 tatatccgaccttgtttg-ttcgattcaaaaccgaaccgaaccaatctaaactgaccttgtttggttcggttcttggtttttcatttt-gagatccataa 38607129  T
Q  357 aaccgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacac----aaacttatggttaggcccaaaatta-----aa 447  Q
    |||||||||| | || ||||| |||||||||||   ||||||||||| ||||||  ||||||||    | ||||||| |||||||||||||||     ||    
T  38607130 aaccgatgaaccgatttgatgctaaccacactcgccattttactaatgttatccctcctcacacgcaaacacttatgattaggcccaaaattaagtccaa 38607229  T
Q  448 cataaaatactttttaatccattcactttctctaatcttcatctca 493  Q
    ||||||||||| ||||||||||||| ||| ||| ||| ||||||||    
T  38607230 cataaaatactatttaatccattcattttatctcatcatcatctca 38607275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 493
Target Start/End: Complemental strand, 29109281 - 29109042
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaa 358  Q
    ||||| |||||||||||||| |||  ||||||| ||||| ||| | | ||| ||||||||||||||||||| | | |||||||||| |||||||    ||    
T  29109281 tatccgaccttgtttggttcagttcaaaaccgaaccgaagcaacctaaaccaatctagtttggtttggttc-tcggtttttaattttgagatccaaagaa 29109183  T
Q  359 ccgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta------aacataa 452  Q
    |||||||| |||   |||| |||||   || |  |||||| |||||||||||  ||||||||| | ||||  ||| || ||||||||      |||||||    
T  29109182 ccgatgaaccaaatcgatgctaaccttccttcccattttagtaatattatcccccctcacacacaattataattaagctcaaaattaaagtccaacataa 29109083  T
Q  453 aatactttttaatccattcactttctctaatcttcatctca 493  Q
    ||||||  ||||| |||||||||||||  ||| ||||||||    
T  29109082 aatactccttaattcattcactttctcctatcatcatctca 29109042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 3919965 - 3919904
Alignment:
Q  268 ttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttc 329  Q
    |||||||||| ||||  ||||||| ||||||||| | | |||||||||||||||||||||||    
T  3919965 ttgtttggtttggttcaaaaccgaaccgaaccaaactaaaccgatctagtttggtttggttc 3919904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 267 - 486
Target Start/End: Complemental strand, 691 - 467
Alignment:
Q  267 cttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatgaa 366  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||    
T  691 cttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcatttt-gagatccgtgaaaccgatgaa 593  T
Q  367 tcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta------aacataaaatacttt 460  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||      |||||||||||||||    
T  592 ccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatacttt 493  T
Q  461 ttaatccattcactttctctaatctt 486  Q
    |||||||||||||||||||| |||||    
T  492 ttaatccattcactttctctcatctt 467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 7e-78; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 258 - 469
Target Start/End: Original strand, 19947774 - 19947984
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| || ||||||||||| ||||||||||||||| ||||||||||  | |||||| |||| ||||||||||||||||| | |||| |||||||||||    
T  19947774 atatccgacattgtttggttcagtttgaaaccgatccaaaccaatcgaatctgatctactttgatttggttcatggtttttca-tttcaagatccgtgaa 19947872  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatac 457  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19947873 accgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataagatac 19947972  T
Q  458 tttttaatccat 469  Q
    ||||||||||||    
T  19947973 tttttaatccat 19947984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 258 - 443
Target Start/End: Complemental strand, 16746541 - 16746357
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||    
T  16746541 atatccaaccttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttca-tttcgagatccgtgaa 16746443  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaat 443  Q
    | ||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16746442 atcgatgaaccaatccgatgataacctcactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaat 16746357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 258 - 485
Target Start/End: Original strand, 31895962 - 31896181
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||| |||||| ||||||||||    
T  31895962 atatccgaccttgtttggttcggtttgaaaccgatctgaaccaatccaaaccgatctagtttggtttggttcatgatttttt-atttcgtgatccgtgaa 31896060  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta------aacata 451  Q
    |||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||    
T  31896061 acc-------------gatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaagtccaacata 31896147  T
Q  452 aaatactttttaatccattcactttctctaatct 485  Q
    ||||| ||| ||||||||||||||||||| ||||    
T  31896148 aaatattttataatccattcactttctctcatct 31896181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 16746660 - 16746553
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||    
T  16746660 atatccaaccttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggt-ttttcatttcgagatccgtgaa 16746562  T
Q  358 accgatgaa 366  Q
    | |||||||    
T  16746561 atcgatgaa 16746553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 258 - 446
Target Start/End: Original strand, 46655581 - 46655768
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| |||||  |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| ||||| | ||||||||||||||||    
T  46655581 atatccgaccttacttggttcggtttgaaaccgatccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttca-tttcgagatccgtgaa 46655679  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaa 446  Q
    ||||||||| |||||  |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46655680 accgatgaaccaatccaatgataaccacacttcttattttactaatattatcctacctcacacaaatttatggttaggcccaaaattaa 46655768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 259 - 447
Target Start/End: Original strand, 44471084 - 44471271
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaa 358  Q
    ||||| ||||||||| ||||||||  ||||||| || |||||||| | ||||||||||||||||| ||||| ||| |||||||||| || ||||    ||    
T  44471084 tatccgaccttgtttagttcggttcaaaaccgaaccaaaccaatctaaaccgatctagtttggttcggttcttgg-tttttaattttgaaatccaaagaa 44471182  T
Q  359 ccgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaa 447  Q
    |||||||| | | | |||| ||||   |||||  | |||| |||||||||||  ||||| ||| ||||||| ||| || ||||||||||    
T  44471183 ccgatgaaccgaaccgatgctaacataactccccagtttagtaatattatccctcctcaaacacacttatgattaagctcaaaattaaa 44471271  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 259 - 421
Target Start/End: Complemental strand, 11503445 - 11503284
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaa 358  Q
    ||||| ||||||| ||||  ||||  ||||||| ||||||||||||| ||||||||  ||||||||||||| | | ||||| |||| |||||||  ||||    
T  11503445 tatccgaccttgtctggtaaggttcaaaaccgaaccgaaccaatcgaaaccgatcttatttggtttggttc-tcgatttttcattttgagatccaagaaa 11503347  T
Q  359 ccgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacaca 421  Q
    ||||| || | | |  ||| ||||| ||||||  ||||||||| ||||||||  |||||||||    
T  11503346 ccgataaaccgaacccatgctaacctcactccccattttactattattatccctcctcacaca 11503284  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 30554658 - 30554588
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttc 329  Q
    ||||| ||||||||| ||||||||  ||| ||| ||||||||||| | ||||||||||||||||| |||||    
T  30554658 tatccgaccttgtttagttcggttcaaaatcgaaccgaaccaatctaaaccgatctagtttggttcggttc 30554588  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 779617 - 779538
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttt 338  Q
    ||||||||||||||| ||||||||  |||| ||  |||||||| | | ||| ||||||||||||| ||||| ||||||||    
T  779617 tatccaaccttgtttagttcggttcaaaacagaatcgaaccaacctaaaccaatctagtttggttcggttcttggttttt 779538  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 44682111 - 44682037
Alignment:
Q  265 accttgtttggttcggtttgaaaccgatccgaaccaatcg-ataccgatctagtttggtttggttcatggttttt 338  Q
    |||||||||||||||| |  ||||||| | ||||||| |  | ||||||||||||||||||||||| ||||||||    
T  44682111 accttgtttggttcggatcaaaaccgaactgaaccaaacctaaaccgatctagtttggtttggttcttggttttt 44682037  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 46892670 - 46892715
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatc 303  Q
    |||||| ||||||||||||||||||| ||||||| || ||||||||    
T  46892670 atatccgaccttgtttggttcggtttaaaaccgaaccaaaccaatc 46892715  T

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Target: scaffold0565 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 258 - 491
Target Start/End: Complemental strand, 1964 - 1729
Alignment:
Q  258 atatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaa 357  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||| | || |||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  1964 atatccgaccttgtttggttcggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggttttt-aatttcgagattcgtgaa 1866  T
Q  358 accgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta------aacata 451  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||  ||||||||||||||||||   |||||||      ||||||    
T  1865 accgatgaaccaatccgatgataacaacactccttattttactaatattattctacct--cacaaacttatggttagg-ttaaaattaaaatccaacata 1769  T
Q  452 aaatactttttaatccattcactttctctaatcttcatct 491  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  1768 aaatactttttaatccattcactttctctcatcatcatct 1729  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 447
Target Start/End: Original strand, 11846307 - 11846494
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaa 358  Q
    ||||| ||||||||||||| ||||  ||||||| | |||||||   | ||||||||||||||||| ||||| | | |||||||||| |||||||    ||    
T  11846307 tatccgaccttgtttggtttggttcaaaaccgaactgaaccaacttaaaccgatctagtttggttcggttc-tcggtttttaattttgagatccaatgaa 11846405  T
Q  359 ccgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaa 447  Q
    || ||||| |||  ||||| || || ||||||  |||||| |||||||||||  ||||||||| ||||||| ||| || ||||||||||    
T  11846406 ccaatgaaccaaattgatgctatcctcactccccattttagtaatattatccctcctcacacacacttatgattaagctcaaaattaaa 11846494  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 493
Target Start/End: Original strand, 1208720 - 1208864
Alignment:
Q  355 gaaaccgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaa------c 448  Q
    |||||| ||||||| |  ||||| ||||| |||||||| |||||||||| ||||||  | ||||||| ||||||  |||||||||||||||||      |    
T  1208720 gaaaccaatgaatcgaattgatgctaaccccactccttgttttactaatgttatccctcttcacacacacttatcattaggcccaaaattaaagttcagc 1208819  T
Q  449 ataaaatactttttaatccattcactttctctaatcttcatctca 493  Q
    ||||||||||  ||||| ||||||||||| || ||| ||||||||    
T  1208820 ataaaatactacttaattcattcactttccctcatcatcatctca 1208864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 493
Target Start/End: Original strand, 9826816 - 9827043
Alignment:
Q  271 tttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatgaatcaa 370  Q
    ||||||||||||  ||||||| |||||||||   | ||||||||||||||||| | ||| | | |||||||||| || ||||    |||||||||| |||    
T  9826816 tttggttcggttgaaaaccgaaccgaaccaacataaaccgatctagtttggttcgattc-tcggtttttaattttgaaatccaaagaaccgatgaaccaa 9826914  T
Q  371 tctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta------aacataaaatactttttaa 464  Q
     |||||| ||||| |||| |   ||||| |||||||||||  |||||||||  |||||| ||| || ||| ||||      |||||||||||||  ||||    
T  9826915 actgatgttaacctcacttcccgttttagtaatattatccctcctcacacacgcttatgattaagctcaatattaaagtccaacataaaatactccttaa 9827014  T
Q  465 tccattcactttctctaatcttcatctca 493  Q
    | |||||||||||||  ||| ||||||||    
T  9827015 ttcattcactttctcccatcatcatctca 9827043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 7176598 - 7176529
Alignment:
Q  259 tatccaaccttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggtt 328  Q
    ||||||||||||||||||| ||||  ||| ||| ||||||||| | | ||||||||||||||||| ||||    
T  7176598 tatccaaccttgtttggtttggttcaaaatcgaaccgaaccaacctaaaccgatctagtttggttcggtt 7176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 23301484 - 23301548
Alignment:
Q  265 accttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttc 329  Q
    ||||||||||||||||||  ||||||| ||||||||| | | || |||||||||||||| |||||    
T  23301484 accttgtttggttcggttcaaaaccgaaccgaaccaacctaaactgatctagtttggttcggttc 23301548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 265 - 478
Target Start/End: Original strand, 13819 - 14037
Alignment:
Q  265 accttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttaatttcgagatccgtgaaaccgatg 364  Q
    ||||||| |||||| |||  ||| ||| ||||||||||| | || |||||  |||||||||||| || | ||||| |||| |||||||   |||||||||    
T  13819 accttgtctggttcagttcaaaatcgaaccgaaccaatctaaactgatcttatttggtttggtt-atcggtttttcattttgagatccaataaaccgatg 13917  T
Q  365 aatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaa------cataaaatact 458  Q
    |||| | | |||| ||||| ||||||  ||||||||| |||||| |  | ||||||| |||||||  || |||||||||||||      |||||| ||||    
T  13918 aatcgaaccgatgctaacctcactccccattttactattattatacctcttcacacacacttatgagtatgcccaaaattaaagcccagcataaagtact 14017  T
Q  459 ttttaatccattcactttct 478  Q
      ||||||||||||||||||    
T  14018 acttaatccattcactttct 14037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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