View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_high_13 (Length: 490)
Name: NF17158_high_13
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 30 - 475
Target Start/End: Original strand, 13856891 - 13857327
Alignment:
| Q |
30 |
tgagtggtaccaaagttgtagaaagaggagttatgcatttaacaagtttagatatcagattggctaacttgaataagagatacgattcaattccatcaat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13856891 |
tgagtggtaccaaagttgtagaaagaggagttatgcatttaacaagtttagatatcagattggctaacttgaataagagatacgattcaattccattaat |
13856990 |
T |
|
| Q |
130 |
agctcgacaatcaacctcaaattttgcattgttagaagaaccatccagcaaactgttaagggtattcaagaacctgtagcataaatgagacacttactct |
229 |
Q |
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| T |
13856991 |
agctcgacaatcaccctcaaattttgcattgttagaagaaccatccagcaaactgttaagg---------aacctgtagcataaatgagacacttactct |
13857081 |
T |
|
| Q |
230 |
tgaatagatatttacgcctatcttctaattttctatagaacgcaacctttcccaggcatacttgtcatactgatcagtagagattttatcatttgaagcc |
329 |
Q |
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| T |
13857082 |
tgaatagatatttacgcctatcttctaattttctatagaacgcaacatttccaaggcatacttgtcatactgatcagtagagattttatcatttgaagcc |
13857181 |
T |
|
| Q |
330 |
ctctatttcctttcggctgatgattccttgctgaatgtatccactcatacaatgtctgccagattagcaagggaaatttttataaggtgaatacgtaatg |
429 |
Q |
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| T |
13857182 |
ctctatttcctttcggcagatgattccttgctgaatgtatccactcatacaatgtctgtcaaattagcaagggaaatttttataaggtgaatacgtaatg |
13857281 |
T |
|
| Q |
430 |
ttacttaaattgcaatgcattgtattgtcgctgtgactgttgttaa |
475 |
Q |
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| T |
13857282 |
ttacttaaattgcaatgcattgtattgtcactgtgactgttgttaa |
13857327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 200 - 353
Target Start/End: Original strand, 13865638 - 13865792
Alignment:
| Q |
200 |
aacctgtagcataaatgagacac-ttactcttgaatagatatttacgcctatcttctaattttctatagaacgcaacctttcccaggcatacttgtcata |
298 |
Q |
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| T |
13865638 |
aacctgtagcataaaggagacaccttattgatgaatagatatttactcatatcttcaaattttctataaaatgcaacatttccaaggcatacttgtcata |
13865737 |
T |
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| Q |
299 |
ctgatcagtagagattttatcatttgaagccctctatttcctttcggctgatgat |
353 |
Q |
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| T |
13865738 |
ctgatcagtagagattttatcatttgaatcccgccatttcctttcagctgatgat |
13865792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 67 - 409
Target Start/End: Original strand, 16022681 - 16023031
Alignment:
| Q |
67 |
tttaacaagtttagatatcagattggctaacttgaataagagatacgattcaattccatcaatagctcgacaatcaacctcaaattttgcattgttagaa |
166 |
Q |
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||||||||||||| |||| || ||| |||| ||||||||||||| |||| | ||||| |||||| ||||| ||| |||||||||||| ||| | |||| |
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| T |
16022681 |
tttaacaagtttatatattagtttgtctaatgtgaataagagatatgattgagttccaataatagcacgacagtcatcctcaaattttgaattatcagaa |
16022780 |
T |
|
| Q |
167 |
gaaccatccagcaaactgttaagggtattcaagaacctgtagcataaatgagacacttactcttgaatagatatttacgcctatcttctaattttctata |
266 |
Q |
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|| |||||||| ||||||| ||||| | ||| |||||||||||||||| |||||||||| ||||| |||||||||| | ||||||| ||||||| ||| |
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| T |
16022781 |
gagccatccagtaaactgtaaagggcaatcatgaacctgtagcataaaggagacacttagtcttg-atagatatttgcatgtatcttcaaattttcaata |
16022879 |
T |
|
| Q |
267 |
gaacgcaacctttcccaggc--atacttgtcatactgatcagtagagattttatcatttgaagccctctatttcctttc---ggctgatgatt----cct |
357 |
Q |
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|| ||||| |||| |||| |||| | ||||| |||||||| ||| || ||| |||||||||| || |||||||||| || |||||| | | | |
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| T |
16022880 |
taatgcaacatttcaaaggcatatacctatcatattgatcagtggagcttgtattatttgaagccttccatttcctttcagtggatgatgagttaacctt |
16022979 |
T |
|
| Q |
358 |
tgctgaatgtatccactcatacaatgtctgccagattagcaagggaaatttt |
409 |
Q |
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||||| ||||||| ||||||||||||||| || |||||||| ||||||||| |
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| T |
16022980 |
tgctgcgtgtatcctctcatacaatgtctgtcaaattagcaaaggaaatttt |
16023031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 26201435 - 26201581
Alignment:
| Q |
68 |
ttaacaagtttagatatcagattggctaacttgaataagagatacgattcaattccatcaatagctcgacaatcaacctcaaattttgcattgttagaag |
167 |
Q |
| |
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|||||||||||| ||||||| ||| ||||| |||| |||| |||||| | | ||||| |||||| ||||| ||| | |||||||||| ||| | ||||| |
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| T |
26201435 |
ttaacaagtttatatatcagcttgtctaacgtgaacaagacatacgactgagttccaataatagcccgacagtcatcttcaaattttgaattatcagaag |
26201534 |
T |
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| Q |
168 |
aaccatccagcaaactgttaagggtattcaagaacctgtagcataaa |
214 |
Q |
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| T |
26201535 |
aaccatccagtaaactgtaaagagaattcatgaacctgcagcataaa |
26201581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 29624636 - 29624782
Alignment:
| Q |
68 |
ttaacaagtttagatatcagattggctaacttgaataagagatacgattcaattccatcaatagctcgacaatcaacctcaaattttgcattgttagaag |
167 |
Q |
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|||||||||||| ||||||| ||| ||||| |||| |||| ||| || | | ||||| |||||||||||| ||| | |||||||||| ||| | ||||| |
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| T |
29624636 |
ttaacaagtttatatatcagcttgtctaacgtgaacaagacatatgactgagttccaataatagctcgacagtcatcttcaaattttgaattatcagaag |
29624735 |
T |
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| Q |
168 |
aaccatccagcaaactgttaagggtattcaagaacctgtagcataaa |
214 |
Q |
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|||||||||| ||||||| ||| | ||||| ||||||| |||||||| |
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| T |
29624736 |
aaccatccagtaaactgtaaagagaattcatgaacctgcagcataaa |
29624782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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