View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17158_high_16 (Length: 441)
Name: NF17158_high_16
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 178 - 295
Target Start/End: Complemental strand, 45908972 - 45908855
Alignment:
| Q |
178 |
cggacactgaatatatgttcgatttaattctaaagtgtcgatactacgtagtagccaaaccttcatatggtatggtattattacaaagaaagatttaagt |
277 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45908972 |
cggacactagatatatgttcgatttaattctaaagtgtcgatactacgtagtagccaaaccttcatatggtatggtattattacaaagaaagatttaagt |
45908873 |
T |
|
| Q |
278 |
ctaagctattatcacttg |
295 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45908872 |
ctaagctattatcacttg |
45908855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 45908819 - 45908726
Alignment:
| Q |
331 |
ggtgtcactgttgtagtggttgcacttgcagctacttcttcttgcacatattctttctctattatcatcacctctttttcttgccgtgaagaag |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45908819 |
ggtgtcactgttgtagtggttgcacttgcagctacttcttcttgcacatattctttctctattatcatcacctctttttcttgccgtgaagaag |
45908726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 45909119 - 45908959
Alignment:
| Q |
16 |
atggccaatcatgaaaggcgatacatttaacgtcagcaaattatcatcaacatagtcaatatatgaaacacta--------------acatagacacgtt |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
45909119 |
atggccaatcatgaaaggcaatacatttaacgtcagcaaattatcatcaacatagtcaatatatgaaacactaacacagacacagtcacacagacacgtt |
45909020 |
T |
|
| Q |
102 |
gacatagataataatttgagaaatgaaagtaattgaatgtaatcaaacggacactggatat |
162 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45909019 |
gacgtggataataatttgagaaatgaaagtaattgaatgtaatcaaacggacactagatat |
45908959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 7251030 - 7250976
Alignment:
| Q |
94 |
gacacgttgacatagataataatttgagaaa-tgaaagtaattgaatgtaatcaa |
147 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
7251030 |
gacacgttgacaccaataataatttgagaaaatgaaagtaattgaatataatcaa |
7250976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 4070364 - 4070417
Alignment:
| Q |
92 |
tagacacgttgacatagataataatttgagaaatga-aagtaattgaatgtaat |
144 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
4070364 |
tagacacatagacatagataataatttgagaaataagaagtgattgaatgtaat |
4070417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University