View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_high_18 (Length: 425)
Name: NF17158_high_18
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 34579809 - 34579586
Alignment:
| Q |
16 |
atgtatgcactcattttatagttattatgcactannnnnnncattgtaatttataataatttgatatttttaaaaatattcattgaaacaaatcgaactt |
115 |
Q |
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| T |
34579809 |
atgtatgcactcattttatagttattatgcactatttttttcattgtaatttataataatttgatatttttaaaaatattcattgaaacaaaccgaactt |
34579710 |
T |
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| Q |
116 |
tttacgcgacatagtattttaaaacggtagaagtataaaatataggcgttatttcacttcannnnnnnnaataggtataaatatgtcattgtttcctgca |
215 |
Q |
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| T |
34579709 |
tttacgcgacatagtattttaaaacggtaaaagtataaaatataggcgtcatttcactacattttttttaataggtataaatatgtcattgtttcctgca |
34579610 |
T |
|
| Q |
216 |
ctttaactatactttgacattggtc |
240 |
Q |
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|||||||||| |||||||||||||| |
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| T |
34579609 |
ctttaactat-ctttgacattggtc |
34579586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 257 - 401
Target Start/End: Complemental strand, 34578439 - 34578295
Alignment:
| Q |
257 |
ttttgatcagaagcaactcatctgcaattgattctttcctctcattctttgctaatctgcctgagtagttgtccagtgaagaacctacaactgttcccac |
356 |
Q |
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| T |
34578439 |
ttttgatcagaagcaactcatctgcaattgattctttcctctcattctttgctaatctgtctgagtagttgtccagtggagaacctacaactgttcccac |
34578340 |
T |
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| Q |
357 |
ctgatcatattcaaatcacaacaaaatggttaaaggatgttgaac |
401 |
Q |
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| T |
34578339 |
ctgctcatattcaaatcacaacaaaaaggttaaaggatgttgaac |
34578295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 27690326 - 27690379
Alignment:
| Q |
244 |
gtaagcagaaaggttttgatcagaa-gcaactcatctgcaattgattctttcct |
296 |
Q |
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| T |
27690326 |
gtaagctgaaaggttttgatcagaaagcaactcatctgcaattgattctttcct |
27690379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 27690385 - 27690437
Alignment:
| Q |
348 |
tgttcccacctgatcatattcaaatcacaacaaaatggttaaaggatgttgaac |
401 |
Q |
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| T |
27690385 |
tgttcccacctgatcatattcaaatcacaacaaaaagg-taaaagatgttgaac |
27690437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 244 - 390
Target Start/End: Complemental strand, 35085370 - 35085223
Alignment:
| Q |
244 |
gtaagcagaaaggttttgatcagaa-gcaactcatctgcaattgattctttcctctcattctttgctaatctgcctgagtagttgtccagtgaagaacct |
342 |
Q |
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|||||| |||| ||||||||| ||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||||| | |||||||| ||||||| |
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| T |
35085370 |
gtaagctgaaaagttttgatcggaaagcaactcgtctgcaattgattctttcctctcacggtttgttaatctgcctgagtaatagtccagtggagaacct |
35085271 |
T |
|
| Q |
343 |
acaactgttcccacctgatcatattcaaatcacaacaaaatggttaaa |
390 |
Q |
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|| | ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35085270 |
accattgttcccacctgatcatattcaaatcacaacaaaaaggttaaa |
35085223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 7268708 - 7268655
Alignment:
| Q |
66 |
ttataataatttgatatttttaaaaatattcattgaaacaaatcgaacttttta |
119 |
Q |
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| T |
7268708 |
ttataaaaagttgatattttaaaaaatattcattgagacaaatcgaacatttta |
7268655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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