View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17158_high_19 (Length: 414)

Name: NF17158_high_19
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17158_high_19
NF17158_high_19
[»] chr1 (2 HSPs)
chr1 (8-400)||(12997138-12997540)
chr1 (353-389)||(12996470-12996506)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 12997540 - 12997138
Alignment:
Q  8 cgaagaaaatatatttaaagatttagagatttttaaaggatccaaagaaaaatagattttataatatcctatttttgtagggtcccnnnnnnnn---tag 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||           |||    
T  12997540 cgaaaaaaatatatttaaagatttagagatttttaaaggatccaaaaaaaattagattttataatatcctatttttgtagggtcccaaaaaaaaaaatag 12997441  T
Q  105 agatttttaaataggtttataagataaataaatttctaatcacgcccttaaacatatcaatagtttttatataggttccaacgaaaagttaatttactga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12997440 agatttttaaataggtttataagataaataaatttctaatcacgcccttaaacatatcaatagtttttatataggttccaacgaaaaattaatttactga 12997341  T
Q  205 atccttgaattattaaatattttgta------attcccaaattatttaaaagttgaaatgttaattaatgtcacttgaattaat-nnnnnnnnnncccct 297  Q
    ||||||||||||||||||||||||||      |||| |||||||||||||||||||||||||||||||||||||||||||||||            ||||    
T  12997340 atccttgaattattaaatattttgtaaggcccattcacaaattatttaaaagttgaaatgttaattaatgtcacttgaattaataaaaaaaaaaaaccct 12997241  T
Q  298 tctctttcccaatataaaaatggatttttctaatatataagtttagaggatcaactttaattcagagaactatttaaaaataatacaaatatctaataat 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12997240 tctctttcccaatataaaaatggatttttctaatatataagtttagaggatcaactttaattcagagaactatttaaaaataatacaaatatctaataat 12997141  T
Q  398 cct 400  Q
    |||    
T  12997140 cct 12997138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 12996506 - 12996470
Alignment:
Q  353 tttaattcagagaactatttaaaaataatacaaatat 389  Q
    ||||||||||||||||||||||||| | |||||||||    
T  12996506 tttaattcagagaactatttaaaaaaattacaaatat 12996470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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