View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_high_2 (Length: 914)
Name: NF17158_high_2
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 708; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 15 - 898
Target Start/End: Original strand, 47052748 - 47053614
Alignment:
| Q |
15 |
cctgtgggagtgggagagataatttcaaatgactttaaatttgcatatcaaaataaattgatacagtaatgtgtagtcatcaactagtgttttaagtaaa |
114 |
Q |
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| T |
47052748 |
cctgtgggagtgggagagataatttcaaatgactttaaatttgcatatcaaaataaattaatacagtaatgtgtagtcatcaactagtgttttaagtaaa |
47052847 |
T |
|
| Q |
115 |
aaagtttaccaattatgatatactcgtatagttaatcggaaattcaacaatatagctttcaataatttcataatttacctatgtaatcatttannnnnnn |
214 |
Q |
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| T |
47052848 |
aaagtttaccaattatgatatactcgtatagttaatcggaaattcaacaatatagctttcaataatttcataatttacctatgtaatcatttattttttt |
47052947 |
T |
|
| Q |
215 |
acagttttaactattacaatttttaactaacatgcatattccttaggagattcaaattataaaaactatataacctttgtaaaagaaaaaactatatata |
314 |
Q |
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| T |
47052948 |
acagttttaactattacaatttttaactaacatgcatattccttaggagattcaaattataaaaactatataacctttgtaaaagaaaaaactatatata |
47053047 |
T |
|
| Q |
315 |
gaaccaatgtcatcgtaattttacaaaatgtcatcgtaattttttcgaactcaccaccaatccaaacaaacatacacttagcttacttggacaaagcaat |
414 |
Q |
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| T |
47053048 |
gaaccaat---------------------gtcatcgtaattttttcgaactcaccaccaatccaaacaaacatacacttagcttacttggacaaagcaat |
47053126 |
T |
|
| Q |
415 |
catggaaatgaaacctgagcaggcctggatcaatggttggatctttgttaaagtaagatacaactgtggaccgtacgatgggctcagctgttggacatgg |
514 |
Q |
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| T |
47053127 |
catggaaatgaaacctgagcaggcctggatcaatggttggatctttgttaaagtaagatacaactgtggaccgtaagatgggcgcagctgttggacatga |
47053226 |
T |
|
| Q |
515 |
atttgattaaaacccacttttcagttgggcttcaactgccaaagtcatcaccaaaatcactagggatcccaatcgcacaatcattttggacta--ataca |
612 |
Q |
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| T |
47053227 |
atttgattaaaacccacttttcagttgggcttcaactgccaaagtcatcaccaaaatcactagggatcccaatcgcacaatcattttggactactataca |
47053326 |
T |
|
| Q |
613 |
atgcaaactgaaacaagaattcagacacaacttcactgttggttttgatagtttctcactcccttgcttgcagataatttttatcactgattttcagtta |
712 |
Q |
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| T |
47053327 |
atgcaaactgaaacaagaattcagacacaacttcactgttggttttgatagtttctcactcccttgcttgcagataatttttatcactgattttcagtta |
47053426 |
T |
|
| Q |
713 |
tatatgatggtttgtcactagggaaaattagatatcacgtcaaatgatttagcnnnnnnnaattattttattcggaaggtattggccaattagccaaata |
812 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47053427 |
tatataatggtttgtcactagggaaaattagatatcacgtcaaatgatttagctttttttaattattttattcggaaggtattggccaattagccaaata |
47053526 |
T |
|
| Q |
813 |
catcttcataaagtggaaacttaaagaaatatgatgcattttaa--nnnnnnnngtacttttaatatgcaagtttttgagatgaaaac |
898 |
Q |
| |
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| T |
47053527 |
catcttcataaagtggaaactttaagaaatatgatgcattttaattttttttttgtacttttaatatgcaagtttttgagatgaaaac |
47053614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 384 - 750
Target Start/End: Original strand, 47049963 - 47050334
Alignment:
| Q |
384 |
acatacacttagcttacttggacaaagcaatcatggaaatgaaacctgagcaggcctggatcaatggttggatctttgttaaagtaagatacaactgtgg |
483 |
Q |
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| T |
47049963 |
acatacaattagcttacttggacaaagcaatcatggaaatgaagtctgagcaggccaggagcaatggttggatctttgttaaagtaagatacaactgtgg |
47050062 |
T |
|
| Q |
484 |
accgtacgatgggctcagctgttggacatggatttgattaaaacccacttttcagttgggcttcaactgccaaagtcatcaccaaaatcactagggatcc |
583 |
Q |
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| T |
47050063 |
accgtacgatggactcagctgttggacatgaatttgaataaaacccagttttcagttgggcatttactgccaaagtcatccccaaaatcaccaagaagcc |
47050162 |
T |
|
| Q |
584 |
caatcgcacaatcattttggactaatacaatgcaaactgaaacaagaattcagacacaacttcactgttgg-ttttgatagtt-tctcactcccttgctt |
681 |
Q |
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|||| ||||||||||||| || || |||||||||||||||||||| ||||||| |||||| ||| |||| |||| || ||| ||||||||||||||| |
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| T |
47050163 |
caatttcacaatcattttgtacgaacacaatgcaaactgaaacaagtattcagatacaactccacacttggttttttatggttctctcactcccttgcta |
47050262 |
T |
|
| Q |
682 |
gcagataatttttatcac---tgattttcagttatatatgatggtttgtcactagggaaaattagatatcac |
750 |
Q |
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| T |
47050263 |
gcagagcatttgtgtcactagtgattgtcagttatatataatggtttctctgtagcaaaaagtagatatcac |
47050334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 47049746 - 47049782
Alignment:
| Q |
274 |
taaaaactatataacctttgtaaaagaaaaaactata |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
47049746 |
taaaaactatataacctttgtaaaagaaaaaactata |
47049782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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