View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_high_20 (Length: 401)
Name: NF17158_high_20
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 51843500 - 51843870
Alignment:
| Q |
16 |
ataaatggaggctccaaaataacaagacagccataccagtcttgaattaaaacataacaaattgaaacttaagagtagaaactatacgtgctaagtaaca |
115 |
Q |
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| T |
51843500 |
ataaatggaggctccaaaataacaagacagccataccagtcttgaattaaaacaaaacaaattgaaacttaagagtagaaactatacgtgctaagtaaca |
51843599 |
T |
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| Q |
116 |
aacctaagaacatagttttcctggaaaaatatattgatacaaagtaaggatttgttattcttttctaaactttgtccagccatttcagttacatttaact |
215 |
Q |
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| T |
51843600 |
aacctaagaacatagttttcctggaaaaatatattgatacaaagtaaggatttgttattcttttctaaactttgtccagccatttcagttacatttaact |
51843699 |
T |
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| Q |
216 |
aagaatggaaaattgtttgcttccaagtctaaatccactatccgtcgaagt-nnnnnnnngtctaaatctattcttagttaaatgtaactggggtaattt |
314 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51843700 |
aagagtggaaaattgtttgcttccaagtctaaatccactatccgtcgaagtaaaaaaaaagtctaaatctattcttagttaaatgtaactggggtaattt |
51843799 |
T |
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| Q |
315 |
ttaattcctttaaggaaggagaagaagcaaacaattaatcctcttctccttccttgaaggaattaaaaatt |
385 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51843800 |
ttaattccttcaaggaaggagaagaagcaaacaattaatcctcttctccttccttgaaggaattaaaaatt |
51843870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 51843876 - 51843795
Alignment:
| Q |
304 |
tggggtaatttttaattcctttaaggaaggagaagaagcaaacaattaat--cctcttctccttccttgaaggaattaaaaatt |
385 |
Q |
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| T |
51843876 |
tggggtaatttttaattccttcaaggaaggagaagagg--attaattgtttgcttcttctccttccttgaaggaattaaaaatt |
51843795 |
T |
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