View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_high_26 (Length: 364)
Name: NF17158_high_26
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_26 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 364
Target Start/End: Complemental strand, 836547 - 836200
Alignment:
| Q |
7 |
atgtcgaataatatagtgcggtattttctaaagtagtaaagatcctgtgcaatattgcacgattgcgaaaaaacaaagtgacataaaatagtaaatatca |
106 |
Q |
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| T |
836547 |
atgtctaaaaatatagtgcggtatttactaaagtagtaaagatcatgtgcaatattgcacgattgcgaaaaaacaaagtgacataaaatagtaaatatca |
836448 |
T |
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| Q |
107 |
cgtacaattctgttaaacttaatgtctttctgtgcgttcgaattcgctgtccttcgattttctaaagttacttcaattttctgaagttaccataaaaagt |
206 |
Q |
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| T |
836447 |
cgtacaattctgttaaacttaatgtctttctgtgcgttcgaattcgctgtccttcaattttctaaagttact----------gaagttaccataaaaagt |
836358 |
T |
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| Q |
207 |
ctgagggtactcgtctttgatgtgaaacgacgatccatgtctagtctttaaaactggattaggtttggattgaacacttccagccttctttacttgtgtt |
306 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
836357 |
ctgagggtactcgtctttgatgtgaaacgacgattcatgtctagtctttaaaactggattaggtttggattgaacacttccagccttctttacttgtgtt |
836258 |
T |
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| Q |
307 |
tctgaatttctatccggtttatttagacgggaatcggaaagtgacttgattcccacta |
364 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
836257 |
tctgaattcctatccggtttatttagatgggaatcggaaagtgacttgattcccacta |
836200 |
T |
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