View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_high_27 (Length: 346)
Name: NF17158_high_27
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 5278266 - 5277928
Alignment:
| Q |
1 |
cttgtgcaagcaaccctctctgcttattattattgtaataaataaagttcacgtttgttacttgactatatagttgttttgttttcagttgaatttggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5278266 |
cttgtgcaagcaaccctctctgcttattattattgtaataaataaagttcacatttgttatttgactatatagttgttttgttttcagttgaatttggtt |
5278167 |
T |
|
| Q |
101 |
tgataatagattgttgtaaaaaacatgggatttgtgtaaaataataatttt-ctatactccatccattataatgttaattagaattattcatggttcttt |
199 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5278166 |
tgataatagattgttgtaaaaaacattggatttgtgtaaaataataatttttctatactccatccattataatgttaattagaattattcatggttcttt |
5278067 |
T |
|
| Q |
200 |
ctagagaagtgtttctcttgattgacattgttatgtagtctttatgttacacttgaattaaagaatgaaaagtgaacaaaagctatgaaggaagaattgc |
299 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5278066 |
ctagcgaagtgtttctcttgattgacattgttatgtagtctttatgctacacttgaattaaagaatgaaaagtgaacaaaagctatgaaggaagaattgc |
5277967 |
T |
|
| Q |
300 |
aataaattgataagaatcacaccttggagttagtattat |
338 |
Q |
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| T |
5277966 |
aataaattgataagaatcacacctgggagttagtattat |
5277928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 5282835 - 5283015
Alignment:
| Q |
1 |
cttgtgcaagcaaccctctctgcttattattattgtaataaataaagttcacgtttgttacttgactatatagttgttttgttttcagttgaatttggtt |
100 |
Q |
| |
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|||||| || ||||| ||||| ||||| |||||||||||||||||| | || ||||||| |||||| |||||||||||||| | | || ||||| ||| |
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| T |
5282835 |
cttgtgtaatcaaccatctctacttat-attattgtaataaataaaatacatgtttgtt---tgactacatagttgttttgttatgattttaattttgtt |
5282930 |
T |
|
| Q |
101 |
tgataatagattgttgtaaaaaacatgggatttgtgtaaaataataattttctatactccatccattataatgttaattagaattattcatgg |
193 |
Q |
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| T |
5282931 |
gaataatggattgttgt--------tgtgatttctctaaaatgataattttctatatcccatccattagcatgttaattagaattattcatgg |
5283015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 12316855 - 12316933
Alignment:
| Q |
256 |
attaaagaatgaaaagtgaacaaaagctatgaaggaagaattgcaataaattgataagaatcacaccttggagttagta |
334 |
Q |
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|||||||||||||||||||||| |||||||||| ||| | ||||||| |||||| |||||||||| || |||||||||| |
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| T |
12316855 |
attaaagaatgaaaagtgaacagaagctatgaaagaatagttgcaattaattgagaagaatcacatctaggagttagta |
12316933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 20354222 - 20354335
Alignment:
| Q |
1 |
cttgtgcaagcaaccctctctgcttattattattgtaataaataaagttcacgtttgttacttgactatatagttgttttgttttcagttgaatttggtt |
100 |
Q |
| |
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||||||||| ||||||||||| |||||||| |||||| |||||||| || |||||| |||||| |||||||||||||| | | || ||||||||| |
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| T |
20354222 |
cttgtgcaatcaaccctctctacttattatcattgtattaaataaaagacatgtttgt---ttgacttcatagttgttttgttatgaatttaatttggtt |
20354318 |
T |
|
| Q |
101 |
tgataatagattgttgt |
117 |
Q |
| |
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| T |
20354319 |
taataatggattgttgt |
20354335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 20357658 - 20357554
Alignment:
| Q |
1 |
cttgtgcaagcaaccctctctgcttattattattgtaataaataaagttcacgtttgttacttgactatatagttgttttgttttcagttgaatttggtt |
100 |
Q |
| |
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||||||||| ||||| | ||| ||||||||||||||| |||||||| | || || ||| |||| || |||||||||||||||| |||| ||||||||| |
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| T |
20357658 |
cttgtgcaatcaacc-tatctacttattattattgtattaaataaaatgcatgtgatttatttgaatacatagttgttttgttttgagtttaatttggtt |
20357560 |
T |
|
| Q |
101 |
tgataa |
106 |
Q |
| |
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| |||| |
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|
| T |
20357559 |
taataa |
20357554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6235236 - 6235192
Alignment:
| Q |
1 |
cttgtgcaagcaaccctctctgcttattattattgtaataaataa |
45 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||| ||||||| |
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| T |
6235236 |
cttgtgcaaccaaccctctctacttattattattgtattaaataa |
6235192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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