View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17158_high_29 (Length: 328)

Name: NF17158_high_29
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17158_high_29
NF17158_high_29
[»] chr7 (8 HSPs)
chr7 (14-283)||(22884743-22884999)
chr7 (69-277)||(22803435-22803643)
chr7 (69-277)||(22869933-22870141)
chr7 (69-278)||(22887399-22887607)
chr7 (106-243)||(22829175-22829312)
chr7 (69-131)||(22807203-22807265)
chr7 (198-243)||(22874163-22874208)
chr7 (174-211)||(22807278-22807315)
[»] chr1 (2 HSPs)
chr1 (184-277)||(21152349-21152442)
chr1 (288-320)||(39130845-39130877)
[»] scaffold0227 (1 HSPs)
scaffold0227 (288-319)||(7373-7404)
[»] chr5 (1 HSPs)
chr5 (288-320)||(22013363-22013395)
[»] chr2 (1 HSPs)
chr2 (288-320)||(33519735-33519767)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 22884743 - 22884999
Alignment:
Q  14 gtgattatgatctgttcaattttagggctcattctatttctatgcatcctgataacttatatgggcatatgcagaattactgaagtgtccacgaaaatag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22884743 gtgattatgatctgttcaattttagggctcattctatttctatgcatcctgataacttatatgggcatatgcagaattactgaagtgtccacgaaaatag 22884842  T
Q  114 aaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaatttcggaagttatttagtggttgccttattgcatttgaaggtttt 213  Q
    ||||||||||||||||||||||||||||            ||||||||||||| ||||  |||||||||||||||||||||||| ||||||||||| |||    
T  22884843 aaccagtgcaggagaaaaaataaagagc------------ttagcacaaataggatttttgaagttatttagtggttgccttatcgcatttgaagg-ttt 22884929  T
Q  214 gcagattatttctttgtttaccctttgaatctctttaatattgttgaataataactgtagtctcttagat 283  Q
    |||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  22884930 gcaggttatttctttgtttaccctttgaatctctttgatattgctgaataataactgtagtctcttagat 22884999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 69 - 277
Target Start/End: Original strand, 22803435 - 22803643
Alignment:
Q  69 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaa 168  Q
    |||||||| |||||| | |||||| ||||||||||| ||||||||||| | || ||||||||| || |||||||| ||||||||||||||||||| ||||    
T  22803435 cttatatgtgcatatactgaattattgaagtgtccaagaaaatagaacgactgaaggagaaaagatgaagagcttgtccgagtctttagcacaaacagaa 22803534  T
Q  169 tttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgaatctctttaatattgttgaataataac 268  Q
    |||| |||| |||||||||||||  |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| | |||||  ||||||||||     
T  22803535 tttctgaagatatttagtggttggtttattgcatttgaaagtttttcaggttatttctttgtttaccctttgaatctctatgatattactgaataataat 22803634  T
Q  269 tgtagtctc 277  Q
    |||||||||    
T  22803635 tgtagtctc 22803643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 69 - 277
Target Start/End: Original strand, 22869933 - 22870141
Alignment:
Q  69 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaa 168  Q
    |||||||| |||||| | |||||| ||||||||||| ||||||||||| | || ||||||||| || |||||||| ||||||||||||||||||| ||||    
T  22869933 cttatatgtgcatatactgaattattgaagtgtccaagaaaatagaacgactgaaggagaaaagatgaagagcttgtccgagtctttagcacaaacagaa 22870032  T
Q  169 tttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgaatctctttaatattgttgaataataac 268  Q
    |||| |||| |||||||||||||  |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| | |||||  ||||||||||     
T  22870033 tttctgaagatatttagtggttggtttattgcatttgaaagtttttcaggttatttctttgtttaccctttgaatctctatgatattactgaataataat 22870132  T
Q  269 tgtagtctc 277  Q
    |||||||||    
T  22870133 tgtagtctc 22870141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 69 - 278
Target Start/End: Original strand, 22887399 - 22887607
Alignment:
Q  69 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaa 168  Q
    |||||||| |||||||||||| |||||||||||  | |||||| |||| |||  ||||||||| || |||||||| |  |||||||||| ||||||| ||    
T  22887399 cttatatgtgcatatgcagaactactgaagtgttgaagaaaatcgaacgagtaaaggagaaaagatgaagagcttgtttgagtctttagaacaaatataa 22887498  T
Q  169 tttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgaatctctttaatattgttgaataataac 268  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| | |||||  |||| |||||     
T  22887499 tttctgaagttatttagtggttgccttattgcatttg-aggttttgcaggttatttcttagtttaccctttgaatctctgtgatattactgaacaataat 22887597  T
Q  269 tgtagtctct 278  Q
    ||||||||||    
T  22887598 tgtagtctct 22887607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 22829175 - 22829312
Alignment:
Q  106 gaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaatttcggaagttatttagtggttgccttattgcatttg 205  Q
    |||| |||||| |||| ||||||||| || |||||||| || |||||||||||||||| | |||||| |||||||||||||| |||  ||||||||||||    
T  22829175 gaaattagaacgagtggaggagaaaagatgaagagcttgtctgagtctttagcacaaacataatttctgaagttatttagtgattggtttattgcatttg 22829274  T
Q  206 aaggttttgcagattatttctttgtttaccctttgaat 243  Q
    |||||||| ||| ||||||||||| |||||||||||||    
T  22829275 aaggttttacaggttatttctttgattaccctttgaat 22829312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 22807203 - 22807265
Alignment:
Q  69 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaa 131  Q
    |||||||| |||||||||||||||||||||| ||||  |||||| ||| |||| |||||||||    
T  22807203 cttatatgtgcatatgcagaattactgaagtatccaataaaataaaacgagtggaggagaaaa 22807265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 22874163 - 22874208
Alignment:
Q  198 tgcatttgaaggttttgcagattatttctttgtttaccctttgaat 243  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||||    
T  22874163 tgcatttgaaggtttttcaggttatttctttgtttaccccttgaat 22874208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 22807278 - 22807315
Alignment:
Q  174 gaagttatttagtggttgccttattgcatttgaaggtt 211  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  22807278 gaagttatctagtggttggcttattgcatttgaaggtt 22807315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 21152442 - 21152349
Alignment:
Q  184 agtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgaatctctttaatattgttgaataataactgtagtctc 277  Q
    |||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||| | | |||||  |||||||||| |||||||||    
T  21152442 agtggttgccttattgcatttgaaggttttgcaggttatttatttggttaccctttaaatctttatgatattactgaataataattgtagtctc 21152349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 39130877 - 39130845
Alignment:
Q  288 tctatgaagcacggatacagacaccggacacga 320  Q
    |||||||||||||||||| ||||||||||||||    
T  39130877 tctatgaagcacggatacggacaccggacacga 39130845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 319
Target Start/End: Complemental strand, 7404 - 7373
Alignment:
Q  288 tctatgaagcacggatacagacaccggacacg 319  Q
    ||||||||||||||||||||||||||||||||    
T  7404 tctatgaagcacggatacagacaccggacacg 7373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 22013363 - 22013395
Alignment:
Q  288 tctatgaagcacggatacagacaccggacacga 320  Q
    |||||||||||||||||| ||||||||||||||    
T  22013363 tctatgaagcacggatacggacaccggacacga 22013395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 33519735 - 33519767
Alignment:
Q  288 tctatgaagcacggatacagacaccggacacga 320  Q
    |||||||||||||||||| ||||||||||||||    
T  33519735 tctatgaagcacggatacggacaccggacacga 33519767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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