View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_high_36 (Length: 284)
Name: NF17158_high_36
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 22884473 - 22884691
Alignment:
| Q |
15 |
aatttttgctgcaccaacggtagataaaagtgaaatactggctcttgtaagcgataagatggattctttgatcctttgtaatctatgattaaatgattgg |
114 |
Q |
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| T |
22884473 |
aatttttgctgcaccaacggtagataaaagtgaaatactggctcttgtaggcgataagatggattctttgatcctttataatctatgattaaatggttgc |
22884572 |
T |
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| Q |
115 |
gttattgatgagtgataattatgcatttcgaaatgaacttaggaataaaacgattaattcttaaatcaagtagaacttctctttcatgaatgttgtgttc |
214 |
Q |
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| T |
22884573 |
gttattgatgagtcataattatgcatttcgcattgaacttaggaataaaacgattaattcttaaatcaagtagaacttctctttcatgaatgttgtgttc |
22884672 |
T |
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| Q |
215 |
attaaccagtgattagcta |
233 |
Q |
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| T |
22884673 |
aataatcggtgattagcta |
22884691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 22799103 - 22799243
Alignment:
| Q |
53 |
tggctcttgtaagcgataagatggattctttgatcctttgtaatctatgattaaatgattgggttattgatgagtgataattatgcatttcgaaatgaac |
152 |
Q |
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| T |
22799103 |
tggctcttgcaagcggtatgatgaattctttgatcctttatactctatgat-----gactgtgttatcgatgagtgataattatgcatgtcacaatgaat |
22799197 |
T |
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| Q |
153 |
ttaggaataaaacgattaattcttaaatcaagtagaacttctctttcat |
201 |
Q |
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| T |
22799198 |
gtacaaataaaatgatt---tcttaaatcaagtagaatttctctttcat |
22799243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 21152864 - 21152802
Alignment:
| Q |
154 |
taggaataaaacgattaattcttaaatcaagtagaacttctctttcatgaatgttgtgttcat |
216 |
Q |
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| T |
21152864 |
taggaataaaacgatgaattcttaaatcaaggagaacctctctttcatgaatgttgtgttcat |
21152802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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