View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17158_high_40 (Length: 262)
Name: NF17158_high_40
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 34676387 - 34676615
Alignment:
| Q |
12 |
atgaatattaactttcctattttattttaattaccaaagtgggttaaacatgtagtaaccatttgaagtgattaattttcactaaaataaaggcactggt |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34676387 |
atgaatattaactttcctatt-----ttaattaccaaagtgggttaaacatgtagtaaccatttgaagtgattaattttcactaaaataaaggcactggt |
34676481 |
T |
|
| Q |
112 |
gacagaagaagtgaggtcagtgaggatcaggattcaggagcagttgagttttttattggcaacatgtcacaatcaaatacacagaaacaaagatcatgta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34676482 |
gacagaagaagtgaggtcagtgaggatcaggattcaggagcagttgagttttttattggcaacatgtcacaatcaaatacacagaaacaaagatcatgta |
34676581 |
T |
|
| Q |
212 |
tatttggatttggatggagttgaaactacaaagt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34676582 |
tatttggatttggatggagttgaaactacaaagt |
34676615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University