View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_high_44 (Length: 251)
Name: NF17158_high_44
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 54330264 - 54330406
Alignment:
| Q |
105 |
gggaaagccgtttgtttgctctggtcaaaagaataataatttctcaacggttataat-gagaaccgacctcattatta-----aatgtgtcaagtcaaac |
198 |
Q |
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| T |
54330264 |
gggaaagccgtttgtttgctctggtcagaggaataataatttctcaacggttataattgagaaccgacctcattattaaattaaatgtgtcaagtcaaac |
54330363 |
T |
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| Q |
199 |
tccaacacacgcatgcattcaattcaaccctcccttcattcat |
241 |
Q |
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| T |
54330364 |
tccaacacacgcatgcattcaattcaaccctcccttcattcat |
54330406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 54330166 - 54330203
Alignment:
| Q |
1 |
ttgtcttgtctcccgcaaatgttccttacacgtcgcaa |
38 |
Q |
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| T |
54330166 |
ttgtcttgtctcccgcaaatgttccttacacgtcgcaa |
54330203 |
T |
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