View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_high_57 (Length: 237)
Name: NF17158_high_57
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 54266772 - 54266993
Alignment:
| Q |
1 |
aatgcaagcaatgataatgataatctgaatccaagtaacactgtcaccaccaaagcaaaacggacgaggaaaagtgtccctagaacttctccacctcaac |
100 |
Q |
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| T |
54266772 |
aatgcaagcaatgataatgataatctgaatccaagtaacactgtcaccaccaaagcaaaacggacgaggaaaagtgtccctagaacttctccacctcaac |
54266871 |
T |
|
| Q |
101 |
gcagctcaatatacagaggagtcactaggtgatttgctcgatcatatcgccttgattgtttatttcctcttgtatatgtttatctatctctcgtgtcgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54266872 |
gcagctcaatatacagaggagtcactaggtgatttgctcgatcatatcgccttgattgtttatttcctcttgtatatgtttatctatctctcgtgtcgga |
54266971 |
T |
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| Q |
201 |
ttagcatttgacacactaacat |
222 |
Q |
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||||||||| |||||||||||| |
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| T |
54266972 |
ttagcatttaacacactaacat |
54266993 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 25049621 - 25049684
Alignment:
| Q |
67 |
aggaaaagtgtccctagaacttctccacctcaacgcagctcaatatacagaggagtcactaggt |
130 |
Q |
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|||| ||||||||| ||| ||||||| |||||| ||||||||||| |||||||||||||||| |
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| T |
25049621 |
aggagaagtgtcccaagagattctccaattcaacgtagctcaatatatagaggagtcactaggt |
25049684 |
T |
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