View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_high_7 (Length: 611)
Name: NF17158_high_7
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 595
Target Start/End: Original strand, 33582450 - 33583027
Alignment:
| Q |
19 |
aaggttctatcacataaacatgcataattttagtcatactctagtggcatgtaaccaaatgtgccttgtcacatattagtgggaactgatgaaattccat |
118 |
Q |
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| T |
33582450 |
aaggttctatcacataaacatgcataattttagtcatactctagtggcatgtaaccgaatgtgccttgtcacatattagtgggaactgatgaaattccat |
33582549 |
T |
|
| Q |
119 |
catcaatcatatgaagtgactagttgttcatatgaaaattcccctgatttttccaccctaatgccaatgatatgagcaggactcacagaatctgaagttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33582550 |
catcaatcatatgaagtgactagttgttcatatgaaaattcccctgatttttccaccctaatgccaatgatatgagcaggactcacagaatctgaagttc |
33582649 |
T |
|
| Q |
219 |
catatgtagcattaccagagatttcatctaaaagaagatgataaataagagtaaatataggctatattccatgatcaactatattttaattttctatcta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
33582650 |
catatgtagcattaccagagatttcatctaaaagaagatgataaataagagtaaatataggctata-tccatgatcaactatattttaattttttatcta |
33582748 |
T |
|
| Q |
319 |
tatcaatctactgaccactcttaacttgagtgaagatcgcactggattcttctgatagcagttcttgcttcggtgcctccttatactttgaaaaagaata |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33582749 |
tatcaatctactgaccactcttaacttgagtgaagatcgcactggattcttctgatagcagttcttgcttccgtgcctccttatactttgaaaaagaata |
33582848 |
T |
|
| Q |
419 |
cggtaacttagcatttgaatatattctaactgaaattaaatggtttaattcgagtgattaatgatgaggttcaggaaaggtcaagtcaattagaagt--t |
516 |
Q |
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| T |
33582849 |
cagtaacttagcatttgaatatattctaactgaaattaaatggttcaatttgagtgattaatgatgaggttcgggaaaggtcaagtcaattggaagtacc |
33582948 |
T |
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| Q |
517 |
aagtacgaatcctgattgaaacaatcattaactaaactttacttacttcctgtctaaactacggatcataagagttcat |
595 |
Q |
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| T |
33582949 |
aagtacaaatcctggttgaaataattattgactaaattttacttacctcctgtctgaactacgaatcataaaagttcat |
33583027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 135 - 396
Target Start/End: Original strand, 33593582 - 33593842
Alignment:
| Q |
135 |
tgactagttgttcatatgaaaattcccctgatttttccaccctaatgccaatgatatgagcaggactcacagaatctgaagttccatatgtagcattacc |
234 |
Q |
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| T |
33593582 |
tgactagttgttcatatgaaaattcccctgatttttccaccctaatgccaatgatatgagcaggactcacagaatctgaagttccatatgtagcattacc |
33593681 |
T |
|
| Q |
235 |
agagatttcatctaaaagaagatgataaataagagtaaatataggctatattccatgatcaactatattttaattttctatctatatcaatctactgacc |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
33593682 |
agagatttcatctaaaagaagatgataaataagagtaaatataggctatattccatgatcaactataatttaattttttatctatatcaatctactgacc |
33593781 |
T |
|
| Q |
335 |
actcttaacttgagtgaagatcgcactggattcttctgatagcagttcttgcttcggtgcct |
396 |
Q |
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| T |
33593782 |
actcttaacttgagtgaagatcgcgctggatt-ttctgatagcagttcttgcttcggtgcct |
33593842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 138 - 389
Target Start/End: Complemental strand, 37197705 - 37197456
Alignment:
| Q |
138 |
ctagttgttcatatgaaaattcccctgatttttccaccctaatgccaatgatatgagcaggactcacagaatctgaagttccatatgtagcattaccaga |
237 |
Q |
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|||||| |||||||||||| || |||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
37197705 |
ctagttcttcatatgaaaactctcctgatttttccaccctaattccaatcatattagcaggactcgcagaatctgaagttccatatgtagcattaccgga |
37197606 |
T |
|
| Q |
238 |
gatttcatctaaaag-aagatgataaataagagtaaatataggctatattc---catgatcaactatattttaattttctatctatatcaatctactgac |
333 |
Q |
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|| ||||||| |||| ||||||||||||||| || ||||| |||| || |||||||||||||||||||||||||||||| ||||| | || |
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| T |
37197605 |
gacttcatctgaaagaaagatgataaataagcgttcctatagtctatcgtccatcatgatcaactatattttaattttctatct------atctatttac |
37197512 |
T |
|
| Q |
334 |
cactcttaacttgagtgaagatcgcactggattcttctgatagcagttcttgcttc |
389 |
Q |
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|| ||||||||||| ||||||||| ||||||||||| || || | |||||||||| |
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| T |
37197511 |
cattcttaacttgaccgaagatcgcgctggattcttccgaaagaaattcttgcttc |
37197456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 33593003 - 33593090
Alignment:
| Q |
41 |
cataattttagtcatactctagtggcatgtaaccaaatgtgccttgtcaca-tattagtgggaactgatgaaattccatcatcaatca |
127 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||| | || |||||||||||||||||||| ||||||||||| |
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| T |
33593003 |
cataattttagtcatactctggtggcatgtaaccaaatgtgctttgtcatattagcagtgggaactgatgaaattctatcatcaatca |
33593090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 400 - 463
Target Start/End: Complemental strand, 37230611 - 37230548
Alignment:
| Q |
400 |
tatactttgaaaaagaatacggtaacttagcatttgaatatattctaactgaaattaaatggtt |
463 |
Q |
| |
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|||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
37230611 |
tatactttgaaaaataatagagtaacttagcatttaaatatactctaactgaaattaaatggtt |
37230548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 426 - 595
Target Start/End: Original strand, 33596090 - 33596258
Alignment:
| Q |
426 |
ttagcatttgaatatattctaactgaaattaaatggtttaattcgagtgattaatgatgaggttcaggaaaggtcaagtcaattagaagt--taagtacg |
523 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||||||| | ||||||||||| ||| |||| |||| || |
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| T |
33596090 |
ttagcatttgaatatactctaactgaaattaaatggttctattcaagtgatta---atgaggttcggtgaaggtcaagtcgattgcaagtaccaagttcg |
33596186 |
T |
|
| Q |
524 |
aatcctgattgaaacaatcattaactaaactttacttacttcctgtctaaactacggatcataagagttcat |
595 |
Q |
| |
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|| |||| ||| |||||||||| |||| | ||||||||| ||| ||| ||||| |||| || | ||||||| |
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| T |
33596187 |
aaccctggttgtaacaatcattgactagattttacttacctcccgtccgaactatggattatcatagttcat |
33596258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 463
Target Start/End: Complemental strand, 37237528 - 37237465
Alignment:
| Q |
400 |
tatactttgaaaaagaatacggtaacttagcatttgaatatattctaactgaaattaaatggtt |
463 |
Q |
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|||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||| |||| |
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| T |
37237528 |
tatactttgaaaaataatagagtaacttagcatttaaatatactctaactgaaattaaagggtt |
37237465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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