View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_15 (Length: 446)
Name: NF17158_low_15
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 15301972 - 15302115
Alignment:
| Q |
16 |
atcactaacaactcaaatcactagaacattacgacattattatgagtgacacaatattaatccacaaatcataataaatgcatcacagtacaatgctcac |
115 |
Q |
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| T |
15301972 |
atcacaaacaactcctatcgttagaacattacgacattattatgagtgacacaatattaatacacaaatcataataaatgcatcacaatacaatgctcac |
15302071 |
T |
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| Q |
116 |
atactctacttgtatgcatgtgatactgaatacaataactaacg |
159 |
Q |
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| T |
15302072 |
atactctacttgtatgcatgtgatactgaattcaataactaacg |
15302115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 334 - 430
Target Start/End: Original strand, 15302151 - 15302247
Alignment:
| Q |
334 |
ggagggctaggtgttagagttgttatcaatttgagtctcctagccagatagaggtggcggtacttcaaaaggatcattcactttggaaaagggttct |
430 |
Q |
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| T |
15302151 |
ggagggctaggtgttagagttgttatcaatttgagtctcctaaccaaatagaggtggtggtacttcaaaaggatcattcactttggaaaagggttct |
15302247 |
T |
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