View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_17 (Length: 431)
Name: NF17158_low_17
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 401
Target Start/End: Original strand, 7110189 - 7110558
Alignment:
| Q |
14 |
aacctgtgttttataatggattgtttgttcttcaagatcgtcatctttagattggcaacgaagagtcaagggtgttggatttggagccttcaccatattg |
113 |
Q |
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| T |
7110189 |
aacctgtgttttataatggattgtatgttcttcaagatcgtcatctttagattggcaacgaagagtcaagggtgttggatttggagccttcaccttattg |
7110288 |
T |
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| Q |
114 |
ataatataaactgttgtatggcgaagcaagattggtagagttggagcctgcacgttattgttaataatagctatagtctctctag---ccgtgaatgcaa |
210 |
Q |
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| T |
7110289 |
ataatataaactgttgtatggcgaagcaagattggtagagttggagcctgcaccttattgt------tagctacagtctctctagccaccgcgaatgcaa |
7110382 |
T |
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| Q |
211 |
atagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatgtatactcatgtctgcaagacttacatcaatcttaat |
310 |
Q |
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| T |
7110383 |
gtagtatgattaagagtattgaaaactttaagat------------aattgccattgt----tgtatactcatgtctacaagacttacatcaatcttaat |
7110466 |
T |
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| Q |
311 |
tcatacacatgaaaatgggatttgttcattgacttttttcattatggt-agcaagaataaatattgtttgaaaaaattgaattatttcccat |
401 |
Q |
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| T |
7110467 |
ttatacacatgaaaatgggatttgttcattgaatattttcattttggtcagcaagaataaatattgtttcaaaaaattgaattatttcccat |
7110558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 7116451 - 7116544
Alignment:
| Q |
180 |
atagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatg |
274 |
Q |
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| T |
7116451 |
atagctatagtctctctagccacgaatgcaactagtatgattagtagtattgaaaattttatggtaatt-aacttggaactgccattgttgtatg |
7116544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 17374010 - 17374106
Alignment:
| Q |
178 |
taatagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatg |
274 |
Q |
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| T |
17374010 |
taatagctatagtttctctagcttcaaatgagaatagtatgattaggagtatcgaaaatttgaaggtaattgtacttggaactgccattgttgtatg |
17374106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 6606641 - 6606571
Alignment:
| Q |
204 |
aatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatg |
274 |
Q |
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| T |
6606641 |
aatgcaagtagtgtgattatgagtattgaaaattttaaggtaattgaacttggaactgccattgttgtatg |
6606571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 311
Target Start/End: Complemental strand, 31117808 - 31117679
Alignment:
| Q |
179 |
aatagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatgtata |
278 |
Q |
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|||||| ||||||||||||||| ||||||| ||| ||||||| ||||||||| | |||||||| |||| |||||||||||||||||||||||| | | |
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| T |
31117808 |
aatagcgatagtctctctagcctcaaatgcaagtagcatgattaggagtattgatgattttaaggtgattgcacttggaattgccattgttgtatgcaca |
31117709 |
T |
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| Q |
279 |
ctcatgtctgcaagacttacatcaatcttaatt |
311 |
Q |
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||| || |||||| |||||||||||||||| |
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| T |
31117708 |
---atgcctacaagacatacatcaatcttaatt |
31117679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 6631798 - 6631704
Alignment:
| Q |
180 |
atagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatg |
274 |
Q |
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| T |
6631798 |
atagctatagtatcactagcctcaaatgcaagtagtatgattatgagtattgaaaattttaagctaattgaatttggaactgtcattgttgtatg |
6631704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 6615728 - 6615652
Alignment:
| Q |
204 |
aatgcaaatagta---tgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatgtat |
277 |
Q |
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| T |
6615728 |
aatgcaaatagtaccatgattaagaatattgaaaattttaaggtaattggacttgtaacttccattgttgtatgtat |
6615652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 9036849 - 9036816
Alignment:
| Q |
50 |
atcgtcatctttagattggcaacgaagagtcaag |
83 |
Q |
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| T |
9036849 |
atcgtcatctttagattggcaacgaagagtcaag |
9036816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 6613116 - 6613025
Alignment:
| Q |
182 |
agctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtat |
273 |
Q |
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| T |
6613116 |
agctatagtctctctggcctcaaatgcaagtagtgtagttaggagtattgaacattttaagataattgtacttggagttgtcattgttgtat |
6613025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 596412 - 596508
Alignment:
| Q |
178 |
taatagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaattgccattgttgtatg |
274 |
Q |
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| T |
596412 |
taatagctatagtttctctagcttcaaatgagaatagtatgattaggagtatcgataatttgaaggtaattgtacttggaactgccattgttgtatg |
596508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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