View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17158_low_18 (Length: 430)

Name: NF17158_low_18
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17158_low_18
NF17158_low_18
[»] chr4 (19 HSPs)
chr4 (16-411)||(2625267-2625628)
chr4 (333-383)||(2525947-2525997)
chr4 (333-383)||(5035812-5035862)
chr4 (334-383)||(2536682-2536731)
chr4 (328-383)||(2467676-2467731)
chr4 (14-56)||(2391348-2391390)
chr4 (335-377)||(2547613-2547655)
chr4 (172-212)||(2393696-2393736)
chr4 (16-55)||(2367993-2368032)
chr4 (333-376)||(2491264-2491307)
chr4 (16-55)||(5106644-5106683)
chr4 (331-377)||(2360928-2360974)
chr4 (13-55)||(2373559-2373601)
chr4 (333-383)||(5101951-5102001)
chr4 (13-55)||(12124521-12124563)
chr4 (338-383)||(2380052-2380097)
chr4 (16-53)||(5035301-5035338)
chr4 (108-136)||(2391190-2391218)
chr4 (333-377)||(2477716-2477760)
[»] chr1 (1 HSPs)
chr1 (175-210)||(15838059-15838094)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 411
Target Start/End: Complemental strand, 2625628 - 2625267
Alignment:
Q  16 agttcttcgagtaaagggaaacaatcaacaataaagaagattttagtcctgcacataagattcattcggtaaagaatcaacgatttgatttttaaaggga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||    
T  2625628 agttcttcgagtaaagggaaacaatcaacaataaagaagattttagtcctgcacataagattcattcggtaa----------------------aaggga 2625551  T
Q  116 aagtggagatttgggtaagaattgtgtagaagtcaactcttttggagacgatgctaagatcgagagatgtgaggttagggaacctttggaagaggcgggg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         
T  2625550 aagtggagatttgggtaagaattgtgtagaagtcaactcttttggagacgatgctaagatcgagggatgtgaggttagggaacctttggaagagg----- 2625456  T
Q  216 aaggtgatggagggtatgatcatagacttttaggtcacgcacgtaggagacagttggaaatggagagataatgtttgaagacgagcgagagagatttgaa 315  Q
        |||||||||||||||||||||||||||||||||||    ||||||||||||||| ||||||||| |||||||| |||| |||||||||||||||||    
T  2625455 ----tgatggagggtatgatcatagacttttaggtcacg----taggagacagttggagatggagagaaaatgtttggagactagcgagagagatttgaa 2625364  T
Q  316 gtagtggcttttgttgccgttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaactcacttc-ttttatgttgttgctgccgcc 411  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  2625363 gtagtggcttttgttgtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaactcacttctttttttgttgttgctgccgcc 2625267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 2525947 - 2525997
Alignment:
Q  333 cgttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaac 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2525947 cgttgaggaatttgaagatgtgttcccataactcctctggtaaatatgaac 2525997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 5035812 - 5035862
Alignment:
Q  333 cgttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaac 383  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| |||||    
T  5035812 cgttgaggaatttgaagatgttttcccataaatcctctggtaaatttgaac 5035862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 383
Target Start/End: Original strand, 2536682 - 2536731
Alignment:
Q  334 gttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaac 383  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  2536682 gttgagaaatttgaagatgtattcccataactcctctggtaaatatgaac 2536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 2467676 - 2467731
Alignment:
Q  328 gttgccgttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaac 383  Q
    |||| |||||||||||||||||||| | ||||||||||||| |||||||| |||||    
T  2467676 gttgtcgttgaggaatttgaagatgcgctcccataactcctttggtaaatatgaac 2467731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 2391390 - 2391348
Alignment:
Q  14 caagttcttcgagtaaagggaaacaatcaacaataaagaagat 56  Q
    |||||||||||||||||||||| ||||||||||| ||||||||    
T  2391390 caagttcttcgagtaaagggaagcaatcaacaatgaagaagat 2391348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 2547613 - 2547655
Alignment:
Q  335 ttgaggaatttgaagatgtgttcccataactcctctggtaaat 377  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  2547613 ttgaggaatttgaagatgtgctcccataactcatctggtaaat 2547655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 2393736 - 2393696
Alignment:
Q  172 agatcgagagatgtgaggttagggaacctttggaagaggcg 212  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  2393736 agatcgagtgatgtgaggttagggaaccttaggaagaggcg 2393696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 2368032 - 2367993
Alignment:
Q  16 agttcttcgagtaaagggaaacaatcaacaataaagaaga 55  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  2368032 agttcttcgagtaaagggaaacaatcagcaatgaagaaga 2367993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 376
Target Start/End: Original strand, 2491264 - 2491307
Alignment:
Q  333 cgttgaggaatttgaagatgtgttcccataactcctctggtaaa 376  Q
    |||| |||||||||| ||||||||||||||||| ||||||||||    
T  2491264 cgttcaggaatttgaggatgtgttcccataacttctctggtaaa 2491307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 5106683 - 5106644
Alignment:
Q  16 agttcttcgagtaaagggaaacaatcaacaataaagaaga 55  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  5106683 agttcttcgagtaaagggaaacaatcagcaatgaagaaga 5106644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 2360974 - 2360928
Alignment:
Q  331 gccgttgaggaatttgaagatgtgttcccataactcctctggtaaat 377  Q
    |||| |||||||||||| |||||||||||||| ||| ||||||||||    
T  2360974 gccgctgaggaatttgatgatgtgttcccatagctcatctggtaaat 2360928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 2373601 - 2373559
Alignment:
Q  13 tcaagttcttcgagtaaagggaaacaatcaacaataaagaaga 55  Q
    |||||||||||||| ||||||||||||||| |||| |||||||    
T  2373601 tcaagttcttcgagcaaagggaaacaatcagcaatgaagaaga 2373559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 383
Target Start/End: Complemental strand, 5102001 - 5101951
Alignment:
Q  333 cgttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaac 383  Q
    |||||||||||||||||||| | ||||||||||| || ||||||| |||||    
T  5102001 cgttgaggaatttgaagatgcgctcccataactcatccggtaaatatgaac 5101951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 12124521 - 12124563
Alignment:
Q  13 tcaagttcttcgagtaaagggaaacaatcaacaataaagaaga 55  Q
    ||||||||||| |||||||||||||||||| |||| |||||||    
T  12124521 tcaagttcttctagtaaagggaaacaatcagcaatgaagaaga 12124563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 2380097 - 2380052
Alignment:
Q  338 aggaatttgaagatgtgttcccataactcctctggtaaatctgaac 383  Q
    |||||||||| ||||| |||||||||||| |||||||||| |||||    
T  2380097 aggaatttgatgatgtattcccataactcatctggtaaatttgaac 2380052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 5035301 - 5035338
Alignment:
Q  16 agttcttcgagtaaagggaaacaatcaacaataaagaa 53  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaa 5035338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 2391218 - 2391190
Alignment:
Q  108 taaagggaaagtggagatttgggtaagaa 136  Q
    |||||||||||||||||||||||||||||    
T  2391218 taaagggaaagtggagatttgggtaagaa 2391190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 2477716 - 2477760
Alignment:
Q  333 cgttgaggaatttgaagatgtgttcccataactcctctggtaaat 377  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||    
T  2477716 cgttgaggaatttgaagatgccctcccacaactcctctggtaaat 2477760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 15838094 - 15838059
Alignment:
Q  175 tcgagagatgtgaggttagggaacctttggaagagg 210  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15838094 tcgagagatgttaggttagggaacctttggaagagg 15838059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University