View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_20 (Length: 423)
Name: NF17158_low_20
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 3568570 - 3568979
Alignment:
| Q |
1 |
gctagagagcaatctcctttgctggtccaacatttctcccaagaggaagtgtgcatagaccacacgattgaaggaatacgcccttctggctcctcaccca |
100 |
Q |
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| T |
3568570 |
gctagagaggaatctcctttgctggtccaacatttctcccaagaggaagtgtgcatagaccacatgattgaaggaatacgcccttctggctcctcaccca |
3568669 |
T |
|
| Q |
101 |
cattggcgcatcagcagaatgatcttgctaactcggccaacatagcacatttagattatgagggcgtgcacagtgaggagcaacagctggttgcacgtga |
200 |
Q |
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| T |
3568670 |
cattggcgcatcagcagaatgatcttgctaactcggccaacatagcacatttggattatgagggcgtgcacagtgaggagcaacagctggttgcacgtga |
3568769 |
T |
|
| Q |
201 |
ggatgctgcccattcagatatctctatggcaaatctttaagcaacagtaacattcatgagattggttctaacaaggatatacatcctaacatccaacatg |
300 |
Q |
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| T |
3568770 |
ggatgctgcccattcagatatctctatggcaaatctttaagcaacagtaacattcatgagattggttctaacaaggatatatatcctaacatccaacatg |
3568869 |
T |
|
| Q |
301 |
acatggaacttgttggtaattcaggtaccgtcatgtctgaagatagtagcatgcttgcggttcaacctgattttttggcagatgatatagttcattatag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
3568870 |
acatggaacttgttggtaattcaggtaccgtcatgtctgaagatagtagcatgcttgcggttcaacctggttttttggcagatgatatagttcataatag |
3568969 |
T |
|
| Q |
401 |
taacacaggt |
410 |
Q |
| |
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| T |
3568970 |
taacacaggt |
3568979 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 414
Target Start/End: Original strand, 18485273 - 18485357
Alignment:
| Q |
330 |
gtcatgtctgaagatagtagcatgcttgcggttcaacctgattttttggcagatgatatagttcattatagtaacacaggttctg |
414 |
Q |
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||||||||||||| ||||||||||| |||||||| | ||||||||||||||| |||||| | || |||||| |||||||| |
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| T |
18485273 |
gtcatgtctgaaggcagtagcatgctcgcggttcagtttaattttttggcagatgcggtagttcttaatggtaacataggttctg |
18485357 |
T |
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