View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_24 (Length: 399)
Name: NF17158_low_24
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 33332805 - 33333176
Alignment:
| Q |
1 |
agaggagaatttgggaaaggacattgtttggcatgcagctgagagaggaactggaaaaagagatttttcaaggatgattgaattgcctgagaatgtgaaa |
100 |
Q |
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| T |
33332805 |
agaggagaatttaggaaaggacattgtttggcatgcagctgagagagggattggaaaaagagatttttcaaggatgattgaattgcctgagaatgtgaaa |
33332904 |
T |
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| Q |
101 |
ttggatcagattaaggcacatgtggaaaatggagttcttaccattcttgtacctaaagatgcatcacctaaatcgcataaagttcgaaacattaacataa |
200 |
Q |
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| T |
33332905 |
ttggatcagattaaggcacatgtggaaaatggagttctcaccgttcttgtacctaaagatgcatcacctaaatcacataaagttcgaaacattaacatca |
33333004 |
T |
|
| Q |
201 |
ctagtaaactttaagatttgaaaaattataaatgtgttgataggaataaaaatgaagagaaaattatggaaaatagatgtatcctatgatgtaaacaatt |
300 |
Q |
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| T |
33333005 |
ctagtaaactttaagatttgcaaaattata--------gataggaataaaaatggagagaaaattatggaaaatagatgtatcctatgatgtaaacaatt |
33333096 |
T |
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| Q |
301 |
gcatggtgtgatgaaaaatcaatgtttggttaatacttaatataataaggcttttccgtgatcaattttaatgcttatcc |
380 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33333097 |
gcatggtgtgatcaagaatcaatgtttggttaatacttaatataataaggcttttccgtgatcaattttaatgcttatcc |
33333176 |
T |
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