View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_25 (Length: 379)
Name: NF17158_low_25
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_25 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 7712846 - 7712468
Alignment:
| Q |
1 |
caagaaagggccttcgcgaccattgaggtcacgaaacaaacggttccaacctttaaaaagcatgtatggaactttacataaggcaacaattgatataatc |
100 |
Q |
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| T |
7712846 |
caagaaagggccttcgcgaccaatgaggtcacgaaacaaacggttccaacctttaaaaagcatgtatggaactttacataaggcaacaattgatataatc |
7712747 |
T |
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| Q |
101 |
ggcacattgactatgataccaagaatagctgctacaacagctccaggaaaataatgtggcctgcatcgaaaaagagattagaaacatcgataaaatttca |
200 |
Q |
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| T |
7712746 |
ggcacatcaactatgatgccaagaatagctgctacaacagcaccaggaaaataatgtggcctgcatcgaaaaagagattagaaacatcgataaaatttca |
7712647 |
T |
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| Q |
201 |
tagaaaattaagatgtgctttcatgattagagacataatcatactatcaaacctgatctcgtaatattttccatttggcagtccgtcttgtctcagatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7712646 |
tagaaaattaagatgtgctttcatgattagagacataaccatactatcaaacctgatctcgtaatattttccatttggcagtccgtcttgtctcagatca |
7712547 |
T |
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| Q |
301 |
tccataacagagaaataagtatggaagcatgcatctcttacatccatcacaatatcaaaggtcttcaaaatggtgctcc |
379 |
Q |
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| T |
7712546 |
tccataacagagaaataagtatggaagcatgcatctcttacatccatcacaatatcaaaggtcttcaaaatggtgctcc |
7712468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11212158 - 11212253
Alignment:
| Q |
1 |
caagaaagggccttcgcgaccattgaggtcacgaaacaaacggttccaacctttaaaaagcatgtatggaactttacataaggcaacaattgatat |
96 |
Q |
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||||||||| ||||| |||||| |||||||| ||||||| |||| ||| ||||| ||||||||||| || |||| |||| |||||| ||||||| |
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| T |
11212158 |
caagaaaggtccttcacgaccaatgaggtcatgaaacaatcggtgccaccctttgaaaagcatgtaagggcatttaaataaagcaacagttgatat |
11212253 |
T |
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