View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_26 (Length: 371)
Name: NF17158_low_26
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 58 - 277
Target Start/End: Original strand, 8926113 - 8926340
Alignment:
| Q |
58 |
ctttccagttgttgacatggggaagcttaacacagaagagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggtg |
157 |
Q |
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| T |
8926113 |
ctttccagttgttgacatggggaagcttaacacagaagagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggta |
8926212 |
T |
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| Q |
158 |
ctagttctatacatcatcaaaatttctct--------gtgcatgtttagattaacggtgaacttgacagaatcacgatgtgtcgtgtcacctcgttaagt |
249 |
Q |
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| T |
8926213 |
ctagttctatacatcatcaaaatttctctttaatacagtgcatgtttagattaacggtgaacttgacagaatcacgatgtgtcgtgtcacctcgttaagt |
8926312 |
T |
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| Q |
250 |
tcactctgattctaaacatgcatatata |
277 |
Q |
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| T |
8926313 |
tcactttgattctaaacatgcatatata |
8926340 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 55522713 - 55522810
Alignment:
| Q |
59 |
tttccagttgttgacatggggaagcttaacacagaagagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggt |
156 |
Q |
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| T |
55522713 |
tttccagtagttgacatgaagaatcttaacactgaagagaaagcatcaaccatggagatcataaaagatgcttgtgaaaattggggtttctttgaggt |
55522810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 37628696 - 37628757
Alignment:
| Q |
95 |
gagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggt |
156 |
Q |
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| T |
37628696 |
gagagaaaagctactatggagaaaatcaaggatgcttgtgaaaactggggattctttgaggt |
37628757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 36872765 - 36872707
Alignment:
| Q |
98 |
agaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggt |
156 |
Q |
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| T |
36872765 |
agaaaagataccatggagaaaattaaggatgcttgtgagaattggggattctttgaggt |
36872707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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