View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_29 (Length: 347)
Name: NF17158_low_29
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 2692719 - 2692388
Alignment:
| Q |
1 |
gtggttactgggatggtagaatttttactggtgttgatatgacaggcagttttcttcatggttttgtacttaattatgataataatggagataggtattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692719 |
gtggttactgggatggtagaatttttactggtgttgatatgacaggcagttttcttcatggttttgtacttaattatgataataatggagataggtattt |
2692620 |
T |
|
| Q |
101 |
tgtttataatgataatgagtggaagttgaatggtagtttagtgaggtttcagattggttgggatggttatgaaagagagcttgtatggaacgaaaatgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692619 |
tgtttataatgataatgagtggaagttgaatggtagtttagtgaggtttcagattggttgggatggttatgaaagagagcttgtatggaacgaaaatgag |
2692520 |
T |
|
| Q |
201 |
aaacgttggattgagatacaaaaagggccccataatgagtgtgaattatataactattgtggtagttttgctgcttgtgaattgtcagtgttgggttcgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692519 |
aaacgttggattgagatacaaaaagggccccataatgagtgtgaattatataactattgtggtagttttgctgcttgtgaattgtcagtgttgggttcgg |
2692420 |
T |
|
| Q |
301 |
ctatttgtagttgcttacaagggtttgaacta |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2692419 |
ctatttgtagttgcttacaagggtttgaacta |
2692388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 2700421 - 2700088
Alignment:
| Q |
1 |
gtggttactgggatggtagaatttttactggtgttgatatgacaggcagttttcttcatggttttgtacttaattatgataataatggagataggtattt |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||| ||| |
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| T |
2700421 |
gtggttattgggatggtagaatttttactggtgttgatatgacaggtagttttcttcatggttttatacttaattatgatagtaatggagataggtcttt |
2700322 |
T |
|
| Q |
101 |
tgtttataatgataatgagtggaagttgaatggta---gtttagtgaggtttcagattggttgggatggttatgaaagagagcttgtatggaacgaaaat |
197 |
Q |
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||||||||||||||| |||| |||| ||||| || ||| |||||||||||||||||||||||||||| |||||||||| || ||||||| |||||| |
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| T |
2700321 |
tgtttataatgataacgagttgaaggagaatgataatagttcagtgaggtttcagattggttgggatggtattgaaagagagtttctatggaaagaaaat |
2700222 |
T |
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| Q |
198 |
gagaaacgttggattgagatacaaaaagggccccataatgagtgtgaattatataactattgtggtagttttgctgcttgtgaattgtcagtgttgggtt |
297 |
Q |
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||||||||||||| |||||||||||||||||| ||||||| |||||| | ||||||||||||||| |||||| |||||||||||||| || | ||||| |
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| T |
2700221 |
gagaaacgttggactgagatacaaaaagggcctcataatgtgtgtgaggtttataactattgtggtgattttgcagcttgtgaattgtcggtttcgggtt |
2700122 |
T |
|
| Q |
298 |
cggctatttgtagttgcttacaagggtttgaact |
331 |
Q |
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| T |
2700121 |
cggctatttgtaattgcttaaaagggtttgaact |
2700088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 14521796 - 14521459
Alignment:
| Q |
1 |
gtggttactgggatggtagaatttttactggtgttgatatgacaggcagttttcttcatggttttgtacttaattatgataataatggagataggtattt |
100 |
Q |
| |
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||||||| ||||||||||| ||||||| ||||||||| || | | |||||||||||||||||| |||| |||||||||| |||||||||||| ||||| |
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| T |
14521796 |
gtggttattgggatggtagggtttttaccggtgttgatgcgaaaagtagttttcttcatggttttatactaaattatgatagtaatggagatagatattt |
14521697 |
T |
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| Q |
101 |
tgtttataatgataatgagtggaagttgaatgg---tagtttagtgaggtttcagattggttgggatggttatgaaagagagcttgtatggaacgaaaat |
197 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| | |
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| T |
14521696 |
tgtttataatgataatgagtggaagttgaatggtaatagttcagttaggtttcagattggttgggatggttatgaaagagagcttatatggaatgaaact |
14521597 |
T |
|
| Q |
198 |
gagaaacgttggattgagatacaaaaagggccccataatgagtgtgaattatataactattgtggtagttttgctgcttgtgaattgtcagtgttgggtt |
297 |
Q |
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|||||| ||||| || || ||||| ||||| |||||| |||||||||| |||||||||||||| |||||| ||||||| ||||| | ||||| |
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| T |
14521596 |
gagaaatattggagtgtgaatcaaaaggggcctcataatcagtgtgaattttataactattgtggcgattttgcatcttgtgatacgtcagattcgggtt |
14521497 |
T |
|
| Q |
298 |
cggctatttgtagttgcttacaagggtttgaactaaag |
335 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
14521496 |
gggctatttgtagttgcttacaagggtttgaactaaag |
14521459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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